Gene omics information

Query gene ID	PtpAffx.6389.1.A1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	82.2	PtpAffx.6389.1.A1_at	CV281498	hypothetical protein	-	6e-1	At5g16770	AtMYB9 (myb domain protein 9)	S.X.	H.G.	Please selecteFP Browser (expression)
0.43	69.7	PtpAffx.213326.1.S1_at	pmrna26064	hypothetical protein	-	2e-32	At1g51340	MATE efflux family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.114526.1.A1_at	CV255796	hypothetical protein	-	8e-1	At5g05110	cysteine protease inhibitor, putative / cystatin, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.35	59.7	PtpAffx.125257.2.S1_a_at	AI166767	hypothetical protein	-	5e-6	At5g57060	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.20	34.6	Ptp.1043.1.A1_at	CK090206	-	-	1e-19	At3g07940	zinc finger and C2 domain protein, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.19	32.7	PtpAffx.22916.1.A1_at	CN520839	hypothetical protein	-	2e-2	At5g02290	NAK	S.X.	H.G.	Please selecteFP Browser (expression)
0.06	9.8	PtpAffx.99107.3.A1_s_at	CV240653	hypothetical protein	-	6e-64	At4g19640	ARA7	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.6	99.0	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
5.5	97.1	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
5.0	96.6	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.0	95.3	GSM327397	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM244432	non infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.2	93.5	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.6	91.3	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.3	89.8	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.33	8e-66	252	PtpAffx.1191.1.A1_at	CV241074	hypothetical protein	-	3e-1	At4g37630	CYCD5	C.G.	S.X.	Please selecteFP Browser (expression)
0.53	1e-64	248	Ptp.4521.1.S1_at	BU827411	hypothetical protein	-	3e-1	At2g43350	ATGPX3 (GLUTATHIONE PEROXIDASE 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	4e-3	44	PtpAffx.202201.1.S1_at	pmrna4399	hypothetical protein	-	9e-1	At4g37483	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	9e-1	36	PtpAffx.935.1.S1_at	CV271756	hypothetical protein	-	6e-4	At3g06670	binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	9e-1	36	PtpAffx.29198.2.S1_a_at	CV245287	hypothetical protein	-	1e-16	At4g36420	ribosomal protein L12 family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	9e-1	36	PtpAffx.29198.2.S1_at	CV245287	hypothetical protein	-	1e-16	At4g36420	ribosomal protein L12 family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	9e-1	36	PtpAffx.203789.1.S1_at	pmrna7477	oligopeptide transporter OPT family	-	7e-39	At3g17650	YSL5 (YELLOW STRIPE LIKE 5)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e+0	34	PtpAffx.92989.1.S1_a_at	DN493075	-	-	4e-1	At2g46130	WRKY43	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e+0	34	PtpAffx.56064.1.A1_at	CV280271	-	-	6e-6	At2g31200	ADF6 (ACTIN DEPOLYMERIZING FACTOR 6)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e-1	36	Arabidopsis thaliana	At5g16770	831540	AtMYB9 (myb domain protein 9)	Member of the R2R3 factor gene family.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.11	6e-14	79	Glycine max	Gma.9101.1.S1_at	CD407760	-	-	1e-1	At5g57910	unknown protein	C.G.	S.X.	Please select
0.02	3e-1	36	Hordeum vulgare	Contig12139_at	Contig12139	-	-	8e-5	At5g03080	phosphatidic acid phosphatase-related / PAP2-related	C.G.	S.X.	Please select
0.02	5e+0	34	Oryza sativa	OsAffx.32287.1.A1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	6e-1	36	Triticum aestivum	TaAffx.57942.1.S1_at	CA623678	-	-	4e+0	At5g27700	structural constituent of ribosome	C.G.	S.X.	Please select
0.03	3e-3	42	Vitis vinifera	1615178_at	CB343536	hypothetical protein LOC100267212	-	1e+0	At4g23760	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	Zea mays	ZmAffx.1544.1.S1_s_at	11990232-111	-	-	2e-16	Atcg00820	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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