CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.63409.1.A1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.57 84.2 PtpAffx.63409.1.A1_at CV242002 hypothetical protein - 7e-1 At3g51680 short-chain dehydrogenase/reductase (SDR) family protein S.X. H.G.
0.67 91.1 PtpAffx.215347.1.S1_at pmrna29479 hypothetical protein - 1e+0 At3g09210 PTAC13 (PLASTID TRANSCRIPTIONALLY ACTIVE13) S.X. H.G.
0.36 61.6 Ptp.7031.1.S1_at CF228095 hypothetical protein - 3e-72 At2g39390 60S ribosomal protein L35 (RPL35B) S.X. H.G.
0.32 55.2 PtpAffx.213445.1.S1_at pmrna26290 hypothetical protein - 8e-1 At3g52610 unknown protein S.X. H.G.
0.25 43.6 Ptp.4086.1.A1_at CV256371 - - 4e-1 At3g10185 - S.X. H.G.
0.22 38.3 PtpAffx.39462.1.S1_at CK091543 hypothetical protein - 7e+0 At5g28491 unknown protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
27.8 99.9 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
15.9 99.6 GSM327406 Populus balsamifera_1006_young_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
5.8 97.4 GSM362883 Clone1979_LPI2_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.6 96.2 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.2 89.3 GSM372091 Clone3200_LPI2_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1 88.6 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.8 86.4 GSM372093 Clone3200_LPI5_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8 86.4 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 1e-55 216 PtpAffx.206641.1.S1_at pmrna13187 hypothetical protein - 4e-2 At5g28300 trihelix DNA-binding protein, putative C.G. S.X.
0.08 1e-18 93 PtpAffx.214094.1.S1_s_at pmrna27440 hypothetical protein - 1e-5 At5g28300 trihelix DNA-binding protein, putative C.G. S.X.
0.04 3e-1 36 PtpAffx.5452.3.A1_at CV281348 - - 7e-24 At2g19720 rps15ab (ribosomal protein S15A B) C.G. S.X.
0.03 3e-1 36 PtpAffx.5452.1.S1_a_at CV242317 hypothetical protein - 1e-19 At2g19720 rps15ab (ribosomal protein S15A B) C.G. S.X.
0.01 3e-1 36 PtpAffx.218822.1.S1_x_at pmrna34560 cc-nbs-lrr resistance protein - 3e-2 At2g36895 unknown protein C.G. S.X.
0.01 3e-1 36 PtpAffx.218822.1.S1_at pmrna34560 cc-nbs-lrr resistance protein - 3e-2 At2g36895 unknown protein C.G. S.X.
0.03 1e+0 34 PtpAffx.211702.1.S1_at pmrna22937 hypothetical protein - 7e-3 At4g28460 unknown protein C.G. S.X.
0.03 1e+0 34 PtpAffx.208092.1.S1_at pmrna16073 hypothetical protein - 5e+0 At2g44065 ribosomal protein L2 family protein C.G. S.X.
0.01 1e+0 34 PtpAffx.201550.1.S1_at pmrna3045 hypothetical protein - 1e-12 At5g42340 binding / ubiquitin-protein ligase C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 7e-1 34 Arabidopsis thaliana At3g51680 824331 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV - - - C.G. S.X.
0.05 3e-1 36 Glycine max GmaAffx.93487.1.S1_x_at CF809212 - - 4e+0 At1g12520 ATCCS (COPPER CHAPERONE FOR SOD1) C.G. S.X.
0.03 1e+0 32 Hordeum vulgare Contig3821_s_at Contig3821 - - 3e-1 At5g34830 unknown protein C.G. S.X.
0.04 4e-1 36 Oryza sativa Os09g0320000 9637.m01227 - - 2e-1 At4g10480 nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative C.G. S.X.
0.04 2e-1 36 Triticum aestivum TaAffx.81798.1.S1_at CA681730 - - 4e+0 At4g00220 JLO (JAGGED LATERAL ORGANS) C.G. S.X.
0.03 8e-1 32 Vitis vinifera 1607262_at CF206222.1 hypothetical protein LOC100257078 - 9e-2 At2g40390 unknown protein C.G. S.X.
0.03 5e+0 30 Zea mays Zm.9283.1.A1_at BM267774 - - 1e+0 At2g20930 - C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage