Gene omics information

Query gene ID	PtpAffx.61544.1.A1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.2	PtpAffx.61544.1.A1_at	CA931045	hypothetical protein	-	4e-19	At3g59380	FTA (FARNESYLTRANSFERASE A)	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.132468.1.S1_s_at	DN498520	-	-	4e-1	At3g12140	emsy N terminus domain-containing protein / ENT domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.3977.1.S1_s_at	CA821307	hypothetical protein	-	2e-18	At5g52040	ATRSP41	S.X.	H.G.	Please selecteFP Browser (expression)
0.46	73.7	PtpAffx.134857.2.S1_at	CN523812	hypothetical protein	-	2e-24	At2g32080	PUR ALPHA-1	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	Ptp.1361.3.S1_s_at	BU875386	hypothetical protein	-	2e-1	At4g14660	NRPE7	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.163432.1.S1_s_at	BU812071	hypothetical protein	-	6e-58	At3g62120	tRNA synthetase class II (G, H, P and S) family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.4	94.0	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.8	92.1	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	PtpAffx.84481.1.A1_at	CV246111	-	-	1e-10	At1g61860	protein kinase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e+0	34	PtpAffx.54763.1.A1_at	DN488821	-	-	4e+0	At5g22830	ATMGT10 (MAGNESIUM (MG) TRANSPORTER 10)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.215026.1.S1_s_at	pmrna28973	hypothetical protein	-	4e-1	At3g08580	AAC1 (ADP/ATP CARRIER 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.213396.1.S1_at	pmrna26208	hypothetical protein	-	2e-33	At3g05680	EMB2016 (embryo defective 2016)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.116521.1.S1_at	DN486954	-	-	2e+0	At4g19070	cadmium-responsive protein / cadmium induced protein (AS8)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e+0	32	PtpAffx.60031.1.S1_at	DN498750	hypothetical protein	-	3e-24	At5g15860	ATPCME (PRENYLCYSTEINE METHYLESTERASE)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e+0	32	PtpAffx.57143.1.A1_at	CV237216	hypothetical protein	-	4e-8	At1g50020	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	7e+0	32	PtpAffx.50257.1.A1_s_at	CV252700	hypothetical protein	-	7e-1	At1g55990	glycine-rich protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	7e+0	32	PtpAffx.224472.1.S1_at	pmrna43036	-	-	3e-1	At3g47470	LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.22	4e-19	95	Arabidopsis thaliana	At3g59380	825107	FTA (FARNESYLTRANSFERASE A)	Encodes the alpha-subunit shared between protein farnesyltransferase and protein geranylgeranyltransferase-I. Involved in protein prenylation: covalent attachment of the C-15 isoprene farnesyl or the C-20 isoprene geranylgeranyl groups to the C-terminal end of some proteins. Involved in shoot and flower meristem homeostasis, and response to ABA and drought. Also regulates leaf cell shape. Mutant is epistatic to era1.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.17	2e-6	54	Glycine max	GmaAffx.56889.1.S1_s_at	AW781023	-	-	3e-7	At3g59380	FTA (FARNESYLTRANSFERASE A)	C.G.	S.X.	Please select
0.03	3e-3	42	Hordeum vulgare	Contig12731_at	Contig12731	-	-	2e-4	At3g59380	FTA (FARNESYLTRANSFERASE A)	C.G.	S.X.	Please select
0.10	3e-12	73	Oryza sativa	Os09g0514400	AK060892.1	-	Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit (EC2.5.1.58) (EC 2.5.1.59) (CAAX farnesyltransferase alphasubunit) (Ras proteins prenyltransferase alpha)(FTase-alpha) (Type I protein geranyl-geranyltransferasealpha subunit) (GGTase-I-alpha)	7e-4	At3g59380	FTA (FARNESYLTRANSFERASE A)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e-3	44	Triticum aestivum	Ta.27161.1.S1_at	CK161726	-	-	5e-4	At3g59380	FTA (FARNESYLTRANSFERASE A)	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1619014_at	CB343548	-	-	1e+0	At2g46280	TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1)	C.G.	S.X.	Please select
0.02	9e+0	30	Zea mays	Zm.5557.1.A1_at	CD573414	hypothetical protein LOC100279552	-	1e+0	At5g24890	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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