CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.61388.1.A1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.59 84.9 PtpAffx.61388.1.A1_at BP935694 hypothetical protein - 1e+0 At5g02770 unknown protein S.X. H.G.
0.55 82.2 PtpAffx.70456.1.A1_at CK090706 hypothetical protein - 2e+0 At3g58600 - S.X. H.G.
0.46 73.7 PtpAffx.213720.1.S1_at pmrna26774 hypothetical protein - 9e-9 At3g51610 unknown protein S.X. H.G.
0.29 50.5 PtpAffx.87019.1.A1_at BP935009 hypothetical protein - 9e-14 At5g19390 pleckstrin homology (PH) domain-containing protein / RhoGAP domain-containing protein S.X. H.G.
0.15 25.3 PtpAffx.48013.1.S1_at CK113957 hypothetical protein - 3e-2 At5g53310 myosin heavy chain-related S.X. H.G.
0.13 21.6 PtpAffx.115041.1.A1_at CV234871 hypothetical protein - 1e+0 At3g51580 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.6 99.0 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
8.3 98.5 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
6.8 98.0 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.3 95.8 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.4 94.0 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.6 91.3 GSM244438 Mmd infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2 89.3 GSM244432 non infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.1 88.6 GSM244439 Mixed infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.9 87.2 GSM244437 Mmd infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.9 87.2 GSM327406 Populus balsamifera_1006_young_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 1e-1 38 PtpAffx.214184.1.S1_at pmrna27591 hypothetical protein - 7e-30 At2g25600 SPIK (Shaker Pollen Inward K+ channel) C.G. S.X.
0.02 1e-1 38 PtpAffx.205856.1.S1_at pmrna11609 hypothetical protein - 1e-24 At1g20410 unknown protein C.G. S.X.
0.02 4e-1 36 PtpAffx.135342.1.S1_at CN550200 hypothetical protein - 2e-40 At2g03270 DNA-binding protein, putative C.G. S.X.
0.03 2e+0 34 PtpAffx.215366.1.S1_at pmrna29509 hypothetical protein - 5e+0 At3g07460 unknown protein C.G. S.X.
0.01 2e+0 34 PtpAffx.211223.1.S1_at pmrna22044 hypothetical protein - 1e-1 At3g62030 peptidyl-prolyl cis-trans isomerase, chloroplast / cyclophilin / rotamase / cyclosporin A-binding protein (ROC4) C.G. S.X.
0.01 2e+0 34 PtpAffx.208744.1.S1_s_at pmrna17338 hypothetical protein - 3e-87 At3g22960 PKP-ALPHA C.G. S.X.
0.02 2e+0 34 PtpAffx.153446.1.A1_at CV256826 hypothetical protein - 1e-7 At5g43310 COP1-interacting protein-related C.G. S.X.
0.03 2e+0 34 PtpAffx.132065.2.A1_a_at DN491702 hypothetical protein - 5e-6 At5g63740 zinc finger protein-related C.G. S.X.
0.03 2e+0 34 PtpAffx.132065.2.A1_at DN491702 hypothetical protein - 5e-6 At5g63740 zinc finger protein-related C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 34 Arabidopsis thaliana At5g02770 831253 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBPF - - - C.G. S.X.
0.04 7e+0 32 Glycine max HgAffx.3464.1.A1_at CK351093 - - 3e+0 At4g00420 double-stranded RNA-binding domain (DsRBD)-containing protein C.G. S.X.
0.04 6e-1 34 Hordeum vulgare HVSMEn0024J24r2_at HVSMEn0024J24r2 - - 8e-1 At5g28590 DNA-binding protein-related C.G. S.X.
0.04 4e-2 40 Oryza sativa OsAffx.26255.1.S1_at - - - 0 C.G. S.X.
0.04 1e+0 34 Triticum aestivum TaAffx.97352.1.S1_at AJ610822 - - 2e+0 At5g37550 unknown protein C.G. S.X.
0.03 1e+0 32 Vitis vinifera 1611485_at CF512068 hypothetical protein LOC100255233 - 8e-1 At5g06020 self-incompatibility protein-related C.G. S.X.
0.02 2e+0 32 Zea mays Zm.3481.1.A1_at BG841193 hypothetical protein LOC100276774 - 2e+0 At2g21660 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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