Gene omics information

Query gene ID PtpAffx.61331.1.A1_at
Gene name
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.6388.1PtpAffx.61331.1.A1_atDN484453--8e-7At1g08490CPNIFS (CHLOROPLASTIC NIFS-LIKE CYSTEINE DESULFURASE)S.X.H.G.
0.1830.8Ptp.6271.1.S1_atDN500828hypothetical protein-3e-1At1g65090unknown proteinS.X.H.G.
0.1525.3Ptp.4324.1.S1_atDN486139--1e+0At5g36910THI2.2 (THIONIN 2.2)S.X.H.G.
0.1118.1Ptp.851.1.S1_atBI127099hypothetical protein-1e+1At5g09820plastid-lipid associated protein PAP / fibrillin family proteinS.X.H.G.
0.0711.6Ptp.1026.1.A1_atCK090134hypothetical protein-3e+0At1g73177BNS (BONSAI)S.X.H.G.
0.035.2Ptp.488.1.A1_atCK087424hypothetical protein-2e-1At1g28630unknown proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
6.197.6GSM328059Populus x canescens leaf control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplar
6.197.6GSM328066Populus x canescens leaf control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplar
6.097.5GSM328274Populus x canescens leaf hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
5.497.0GSM328275Populus x canescens leaf hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplar
4.195.5GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue series
4.095.3GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.995.1GSM328062Populus x canescens leaf control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
3.393.7GSM328070Populus x canescens leaf control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplar
3.293.5GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue series
3.193.2GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplar
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.461e-123442Ptp.1227.1.S1_atCV256574hypothetical protein-6e-59At1g08490CPNIFS (CHLOROPLASTIC NIFS-LIKE CYSTEINE DESULFURASE)C.G.S.X.
0.033e-136PtpAffx.201889.1.S1_atpmrna3771hypothetical protein-2e-96At1g77810galactosyltransferase family proteinC.G.S.X.
0.041e+034PtpAffx.24019.1.A1_atCV278708hypothetical protein-5e+0At5g52730heavy-metal-associated domain-containing proteinC.G.S.X.
0.021e+034PtpAffx.152340.1.S1_atCN522546hypothetical protein-1e-41At5g07440GDH2 (GLUTAMATE DEHYDROGENASE 2)C.G.S.X.
0.021e+034PtpAffx.152340.1.S1_s_atCN522546hypothetical protein-1e-41At5g07440GDH2 (GLUTAMATE DEHYDROGENASE 2)C.G.S.X.
0.024e+032PtpAffx.73613.1.S1_atAF236074.1--9e-10At5g16570GLN1C.G.S.X.
0.034e+032PtpAffx.3505.1.A1_atBP935453hypothetical protein-1e-10At3g52190PHF1 (PHOSPHATE TRANSPORTER TRAFFIC FACILITATOR1)C.G.S.X.
0.034e+032PtpAffx.31551.1.S1_atCV247535hypothetical protein-2e+0At5g34828-C.G.S.X.
0.034e+032PtpAffx.31551.1.S1_s_atCV247535hypothetical protein-2e+0At5g34828-C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.068e-754Arabidopsis thalianaAt1g08490837370CPNIFS (CHLOROPLASTIC NIFS-LIKE CYSTEINE DESULFURASE)Chloroplastic NifS-like protein that can catalyze the conversion of cysteine into alanine and elemental sulfur (S(0)) and of selenocysteine into alanine and elemental Se (Se(0)). Overexpression enhances selenium tolerance and accumulation.---C.G.S.X.
0.315e-1891Glycine maxGma.17723.1.A1_s_atBU546586--1e-6At1g08490CPNIFS (CHLOROPLASTIC NIFS-LIKE CYSTEINE DESULFURASE)C.G.S.X.
0.056e+030Hordeum vulgareHY09P21u_s_atHY09P21u--3e-1At3g23727SCRL12 (SCR-Like 12)C.G.S.X.
0.044e-136Oryza sativaOs12g0287300AK070909.1-NIFS-like protein CpNifsp precursor (Cysteinedesulfurase) (EC 4.4.1.- ) (At1g08490/T27G7_14)7e-26At1g08490CPNIFS (CHLOROPLASTIC NIFS-LIKE CYSTEINE DESULFURASE)C.G.S.X.
0.053e+032Triticum aestivumTaAffx.58871.1.S1_atCA613824--2e+0At4g01671unknown proteinC.G.S.X.
0.335e-24109Vitis vinifera1614898_atCF512424hypothetical protein LOC100246217-4e-12At1g08490CPNIFS (CHLOROPLASTIC NIFS-LIKE CYSTEINE DESULFURASE)C.G.S.X.
0.031e+032Zea maysZm.17252.1.A1_atCK369958--5e+0At4g08260protein phosphatase 2C, putative / PP2C, putativeC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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