CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.61240.1.A1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.75 94.1 PtpAffx.61240.1.A1_at DN487796 hypothetical protein - 6e-40 At5g28650 WRKY74 S.X. H.G.
0.47 74.6 PtpAffx.11593.2.S1_at BU897970 - - 1e-3 At2g33800 ribosomal protein S5 family protein S.X. H.G.
0.44 71.9 Ptp.5552.1.S1_s_at AI161787 hypothetical protein - 4e-1 At1g66070 translation initiation factor-related S.X. H.G.
0.41 67.7 PtpAffx.209699.1.S1_at pmrna19143 hypothetical protein - 2e-9 At2g28510 Dof-type zinc finger domain-containing protein S.X. H.G.
0.39 64.6 PtpAffx.203119.1.S1_at pmrna6180 nbs-lrr resistance protein - 2e+0 At5g45510 leucine-rich repeat family protein S.X. H.G.
0.39 64.6 PtpAffx.136305.1.S1_at CF227968 hypothetical protein - 3e-22 At1g11180 secretory carrier membrane protein (SCAMP) family protein S.X. H.G.
0.38 63.7 PtpAffx.64000.1.S1_s_at AJ777881 sodium proton exchanger - 2e-5 At2g01980 SOS1 (SALT OVERLY SENSITIVE 1) S.X. H.G.
0.37 62.3 PtpAffx.112322.3.S1_a_at BU884653 - - 5e-3 At1g02860 NLA (nitrogen limitation adaptation) S.X. H.G.
0.36 61.6 PtpAffx.112322.2.S1_at DN502326 hypothetical protein - 3e-6 At1g02860 NLA (nitrogen limitation adaptation) S.X. H.G.
0.34 58.3 Ptp.1468.1.S1_s_at BU886365 hypothetical protein - 5e-9 At5g52330 meprin and TRAF homology domain-containing protein / MATH domain-containing protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
19.2 99.7 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
15.1 99.5 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
12.1 99.3 GSM328562 Populus x canescens root hypoxia_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.5 97.8 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.8 96.4 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.0 95.3 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.1 93.2 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.8 92.1 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.6 91.3 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 6e-47 188 PtpAffx.37459.1.S1_at CK090406 hypothetical protein - 3e-59 At2g30590 WRKY21 C.G. S.X.
0.34 5e-26 119 PtpAffx.83904.1.S1_at BU824599 - - 2e+0 At2g01110 APG2 (ALBINO AND PALE GREEN 2) C.G. S.X.
0.11 7e-22 105 PtpAffx.202048.1.S1_at pmrna4082 hypothetical protein - 2e-32 At4g24240 WRKY7 C.G. S.X.
0.15 2e-16 87 PtpAffx.54256.2.A1_s_at CV229094 hypothetical protein - 8e-33 At4g24240 WRKY7 C.G. S.X.
0.09 2e-16 87 Ptp.726.1.A1_at CV225822 hypothetical protein - 1e-36 At4g24240 WRKY7 C.G. S.X.
0.12 4e-11 69 PtpAffx.37459.2.S1_at CV268877 hypothetical protein - 4e-18 At2g30590 WRKY21 C.G. S.X.
0.08 2e-9 63 PtpAffx.63488.1.S1_at CV232703 - - 4e-10 At4g31550 WRKY11 C.G. S.X.
0.07 2e-9 63 PtpAffx.205368.1.S1_at pmrna10628 - - 3e-5 At2g24570 WRKY17 C.G. S.X.
0.08 6e-7 56 PtpAffx.63488.3.A1_at CV273768 - - 3e-17 At4g24240 WRKY7 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.27 6e-40 165 Arabidopsis thaliana At5g28650 832971 WRKY74 member of WRKY Transcription Factor; Group II-d - - - C.G. S.X.
0.15 2e-16 87 Glycine max Gma.15748.1.A1_at AI900530 transcription factor - 2e-5 At5g28650 WRKY74 C.G. S.X.
0.18 1e-14 79 Hordeum vulgare Contig22226_at Contig22226 - - 6e-6 At3g04670 WRKY39 C.G. S.X.
0.14 4e-15 83 Oryza sativa Os12g0597700 AK070648.1 - Probable WRKY transcription factor 15 (WRKYDNA-binding protein 15) 4e-28 At5g28650 WRKY74 C.G. S.X.
0.10 2e-3 44 Triticum aestivum Ta.14320.1.A1_at BU100245 WRKY16 transcription factor - 4e-8 At5g28650 WRKY74 C.G. S.X.
0.22 8e-9 59 Vitis vinifera 1619424_at BQ800205 hypothetical protein LOC100267695 - 5e-9 At4g23550 WRKY29 C.G. S.X.
0.19 5e-20 97 Zea mays Zm.9098.1.A1_a_at BM336161 Hypothetical protein LOC100192894 - 6e-6 At4g31550 WRKY11 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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