Gene omics information

Query gene ID PtpAffx.6105.4.S1_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9097.9PtpAffx.6105.4.S1_atCV266789hypothetical protein-7e-2At3g48890ATMP2S.X.H.G.
0.3153.7Ptp.1492.1.S1_s_atCV271929hypothetical protein-4e-33At3g16640TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)S.X.H.G.
0.2950.5PtpAffx.249.859.A1_atCV276451--4e-43At5g03240UBQ3 (POLYUBIQUITIN 3)S.X.H.G.
0.2950.5Ptp.8000.1.S1_atDN484105hypothetical protein-0Atmg01190-S.X.H.G.
0.2850.5PtpAffx.211711.1.S1_atpmrna22951hypothetical protein-3e-8At4g02010protein kinase family proteinS.X.H.G.
0.2747.1PtpAffx.224186.1.S1_atpmrna42489tir-nbs-lrr resistance protein-5e-2At2g03030Toll-Interleukin-Resistance (TIR) domain-containing proteinS.X.H.G.
0.1729.1PtpAffx.213636.1.S1_atpmrna26637hypothetical protein-3e-1At5g43410ethylene-responsive factor, putativeS.X.H.G.
0.058.3PtpAffx.102226.1.A1_atCV232979hypothetical protein-3e+0At5g60500undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family proteinS.X.H.G.
0.046.9Ptp.4496.1.S1_atCB239354hypothetical protein-2e-36At3g1095060S ribosomal protein L37a (RPL37aB)S.X.H.G.
0.046.9PtpAffx.106631.1.S1_atBP932546hypothetical protein-2e-8At3g59300unknown proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
8.898.7GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue series
6.197.6GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue series
3.995.1GSM372090Clone3200_LPI2_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.791.8GSM372093Clone3200_LPI5_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.691.3GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.590.9GSM372094Clone3200_LPI5_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.590.9GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue series
2.389.8GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.389.8GSM244439Mixed infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.289.3GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.583e-69262PtpAffx.6105.3.S1_atAJ768119hypothetical protein-3e-4At3g48890ATMP2C.G.S.X.
0.066e-342Ptp.2453.1.S1_atCV284013hypothetical protein-2e-28At5g52240MSBP1 (membrane steroid binding protein 1)C.G.S.X.
0.034e-136PtpAffx.2006.1.S1_atCV236881hypothetical protein-6e-1At4g19840ATPP2-A1C.G.S.X.
0.024e-136Ptp.6056.1.S1_atCK093494--1e-23At3g14910unknown proteinC.G.S.X.
0.032e+034PtpAffx.2383.4.A1_atDN486324hypothetical protein-5e-4At3g63500unknown proteinC.G.S.X.
0.032e+034PtpAffx.219919.1.S1_atpmrna36084hypothetical protein-2e+0At1g26630FBR12 (FUMONISIN B1-RESISTANT12)C.G.S.X.
0.012e+034PtpAffx.202625.1.S1_atpmrna5245hypothetical protein-4e-66At3g23670KINESIN-12BC.G.S.X.
0.026e+032PtpAffx.92412.1.S1_atBP932785hypothetical protein-7e-1At1g76190auxin-responsive family proteinC.G.S.X.
0.026e+032PtpAffx.8821.1.A1_atCV247370hypothetical protein-2e-7At4g15955epoxide hydrolase-relatedC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.077e-238Arabidopsis thalianaAt3g48890824050ATMP2putative progesterone-binding protein homolog (Atmp2) mRNA,---C.G.S.X.
0.059e-238Glycine maxGmaAffx.92136.1.S1_s_atCF807451--2e-2At1g16905sugar bindingC.G.S.X.
0.035e-134Hordeum vulgareContig15365_s_atContig15365--6e-2At4g35630PSATC.G.S.X.
0.031e-138Oryza sativaOs01g0686000AK110784.1-Conserved hypothetical protein6e+0At5g52390photoassimilate-responsive protein, putativeC.G.S.X.
0.044e+032Triticum aestivumTaAffx.93175.2.S1_atBJ226313--2e+0At1g68590plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putativeC.G.S.X.
0.031e+032Vitis vinifera1618563_atCA817076hypothetical protein LOC100267134-3e-7At2g41040methyltransferase-relatedC.G.S.X.
0.032e+032Zea maysZm.9415.2.A1_atBM348481--7e-2At5g01075beta-galactosidaseC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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