Gene omics information

Query gene ID PtpAffx.60992.1.S1_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.8096.0PtpAffx.60992.1.S1_atDN500477hypothetical protein-1e-3At5g65080MAF5 (MADS AFFECTING FLOWERING 5)S.X.H.G.
0.0914.6PtpAffx.119039.1.S1_atDN486369hypothetical protein-8e-14At5g05970NEDD1 (NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1)S.X.H.G.
0.0812.9PtpAffx.105944.1.S1_atAI165927--3e+0At4g37010caltractin, putative / centrin, putativeS.X.H.G.
0.069.8PtpAffx.26267.1.S1_atCK095584--4e-1At4g10920KELPS.X.H.G.
0.058.3Ptp.2342.2.A1_s_atCK089633hypothetical protein-7e-21At2g26280CID7S.X.H.G.
0.046.9PtpAffx.60083.1.S1_s_atBU836456cc-nbs-lrr resistance protein-1e+0At5g13880unknown proteinS.X.H.G.
0.046.9PtpAffx.16980.1.A1_a_atCK095992hypothetical protein-5e+0At3g02310SEP2 (SEPALLATA 2)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
9.998.9GSM328560Populus x canescens root control_rep_11GSE13109Effect of hypoxia on gene expression in Grey poplar
8.098.4GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplar
6.998.0GSM328561Populus x canescens root control_rep_12GSE13109Effect of hypoxia on gene expression in Grey poplar
6.297.6GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplar
5.296.8GSM328059Populus x canescens leaf control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplar
4.996.5GSM328275Populus x canescens leaf hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplar
4.696.2GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplar
4.195.5GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplar
3.694.5GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue series
3.594.3GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.185e-35149PtpAffx.16980.2.A1_a_atCV271660hypothetical protein-7e+0At5g23260TT16 (TRANSPARENT TESTA16)C.G.S.X.
0.191e-26121PtpAffx.67648.1.A1_atDN490497hypothetical protein-1e+0At4g34760auxin-responsive family proteinC.G.S.X.
0.112e-1273PtpAffx.16980.1.A1_atCK095992hypothetical protein-5e+0At3g02310SEP2 (SEPALLATA 2)C.G.S.X.
0.112e-1273PtpAffx.16980.1.A1_a_atCK095992hypothetical protein-5e+0At3g02310SEP2 (SEPALLATA 2)C.G.S.X.
0.136e-1065PtpAffx.48156.2.S1_a_atDN494720--1e-2At5g13440ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putativeC.G.S.X.
0.053e-859PtpAffx.48156.1.S1_atCV261539--2e+0At3g51020unknown proteinC.G.S.X.
0.045e-446PtpAffx.201979.1.S1_atpmrna3951hypothetical protein-3e-26At3g57230AGL16 (AGAMOUS-LIKE 16)C.G.S.X.
0.045e-446PtpAffx.201979.1.S1_x_atpmrna3951hypothetical protein-3e-26At3g57230AGL16 (AGAMOUS-LIKE 16)C.G.S.X.
0.092e-344PtpAffx.213045.1.S1_atpmrna25528hypothetical protein-5e-24At2g45650AGL6 (AGAMOUS-LIKE 6)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.081e-344Arabidopsis thalianaAt5g65080836632MAF5 (MADS AFFECTING FLOWERING 5)Is upregulated during vernalization and regulates flowering time. Encodes MADS-domain protein. Two variants encoding proteins of 198 and 184 amino acids have been reported.---C.G.S.X.
0.139e-961Glycine maxGma.11362.1.S1_atAW395011--1e-4At3g57230AGL16 (AGAMOUS-LIKE 16)C.G.S.X.
0.033e+032Hordeum vulgareContig3735_atContig3735--2e-1At2g02100LCR69 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 69)C.G.S.X.
0.057e-136Oryza sativaOsAffx.17465.1.S1_at---0C.G.S.X.
0.034e-136Triticum aestivumTaAffx.12150.1.A1_atBJ287441--3e-1At3g04650oxidoreductaseC.G.S.X.
0.093e-2097Vitis vinifera1621827_atCF373383similar to flowering locus C-like MADS-box protein-4e-11At2g45650AGL6 (AGAMOUS-LIKE 6)C.G.S.X.
0.036e-134Zea maysZmAffx.356.1.A1_atAI670543--3e-3At5g09750HEC3 (HECATE 3)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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