Gene omics information

Query gene ID	PtpAffx.60647.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	92.6	PtpAffx.60647.1.S1_at	CV266317	hypothetical protein	-	3e-55	At1g58440	XF1	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.210274.1.S1_at	pmrna20208	hypothetical protein	-	3e-12	At3g49200	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.32	55.2	PtpAffx.9749.1.A1_at	DN491489	hypothetical protein	-	4e+0	At5g04790	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.30	52.0	PtpAffx.54796.1.S1_at	DN497368	aminophospholipid ATPase /// aminophospholipid ATPase	-	3e-1	At1g47970	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.24	41.8	PtpAffx.203194.1.S1_s_at	pmrna6331	hypothetical protein	-	3e-5	At2g45430	DNA-binding protein-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.20	34.6	PtpAffx.225008.1.S1_at	pmrna43994	hypothetical protein	-	2e+0	At5g65580	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.3	98.2	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
7.3	98.2	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.8	98.0	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.5	97.8	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.4	97.7	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
5.4	97.0	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.1	96.8	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.8	96.4	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.4	95.9	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.2	95.6	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.70	0	1651	PtpAffx.205391.1.S1_at	pmrna10677	hypothetical protein	-	3e-68	At1g58440	XF1	C.G.	S.X.	Please selecteFP Browser (expression)
0.14	5e-55	216	PtpAffx.145983.1.S1_at	BU878447	hypothetical protein	-	4e-16	At4g37760	SQE3 (squalene epoxidase 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.36	1e-21	105	Ptp.2385.1.S1_at	BU886586	hypothetical protein	-	2e-21	At2g22830	SQE2 (squalene epoxidase 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.25	1e-18	95	PtpAffx.5622.2.S1_s_at	CV241605	hypothetical protein	-	2e-9	At2g22830	SQE2 (squalene epoxidase 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.13	1e-18	95	PtpAffx.223145.1.S1_x_at	pmrna41002	-	-	7e-9	At1g58440	XF1	C.G.	S.X.	Please selecteFP Browser (expression)
0.13	1e-18	95	PtpAffx.223145.1.S1_at	pmrna41002	-	-	7e-9	At1g58440	XF1	C.G.	S.X.	Please selecteFP Browser (expression)
0.37	1e-18	95	PtpAffx.212998.1.S1_s_at	pmrna25415	hypothetical protein	-	3e-15	At4g37760	SQE3 (squalene epoxidase 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.17	3e-16	87	PtpAffx.218999.1.S1_at	pmrna34779	-	-	3e-9	At2g22830	SQE2 (squalene epoxidase 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.23	3e-16	87	PtpAffx.218378.1.S1_at	pmrna33972	-	-	4e-15	At1g58440	XF1	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.45	3e-55	216	Arabidopsis thaliana	At1g58440	842213	XF1	Encodes a putative protein that has been speculated, based on sequence similarities, to have squalene monooxygenase activity.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.54	4e-80	299	Glycine max	GmaAffx.20777.1.S1_at	BE819900	-	-	4e-8	At2g22830	SQE2 (squalene epoxidase 2)	C.G.	S.X.	Please select
0.36	3e-38	159	Hordeum vulgare	Contig5809_at	Contig5809	-	-	2e-14	At1g58440	XF1	C.G.	S.X.	Please select
0.33	4e-53	210	Oryza sativa	Os03g0231700	AK068401.1	-	Squalene monooxygenase 2 (EC 1.14.99.7)	1e-19	At1g58440	XF1	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.38	3e-46	186	Triticum aestivum	Ta.7591.1.S1_at	CD872021	-	-	2e-8	At4g37760	SQE3 (squalene epoxidase 3)	C.G.	S.X.	Please select
0.37	3e-65	248	Vitis vinifera	1615654_at	CF211462	hypothetical protein LOC100254037	-	7e-14	At1g58440	XF1	C.G.	S.X.	Please select
0.30	8e-11	67	Zea mays	Zm.7407.2.A1_at	CK827055	-	-	3e-3	At1g58440	XF1	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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