Gene omics information

Query gene ID PtpAffx.6053.1.S1_s_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.7794.9PtpAffx.6053.1.S1_s_atCN520953hypothetical protein-9e-21At5g07830AtGUS2 (Arabidopsis thaliana glucuronidase 2)S.X.H.G.
0.5582.2PtpAffx.21989.1.A1_a_atCV242525--7e-6At4g31810enoyl-CoA hydratase/isomerase family proteinS.X.H.G.
0.2950.5PtpAffx.9948.1.S1_atBP936434hypothetical protein-9e-7At2g16770DNA binding / transcription factorS.X.H.G.
0.2340.5PtpAffx.206463.1.S1_atpmrna12817hypothetical protein-6e-10At3g58530F-box family protein-relatedS.X.H.G.
0.1932.7PtpAffx.390.5.S1_atBU895968hypothetical protein-3e-47At1g63690protease-associated (PA) domain-containing proteinS.X.H.G.
0.1525.3PtpAffx.144134.1.S1_a_atCV241139hypothetical protein-5e-17At5g61240protein bindingS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
4.896.4GSM372098Clone3200_LPI5_N-_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.696.2GSM372100Clone3200_LPI5_N+_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.495.9GSM372099Clone3200_LPI5_N+_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.295.6GSM244431non infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.095.3GSM372097Clone3200_LPI5_N-_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.992.5GSM244433Mlp infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.791.8GSM244430non infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.590.9GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.490.4GSM244435Mlp infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.289.3GSM244439Mixed infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
1.0001655PtpAffx.6053.1.S1_atCN520953--9e-21At5g07830AtGUS2 (Arabidopsis thaliana glucuronidase 2)C.G.S.X.
0.161e-1171PtpAffx.120369.1.S1_s_atDN491225hypothetical protein-5e-25At5g34940AtGUS3 (Arabidopsis thaliana glucuronidase 3)C.G.S.X.
0.152e-1067Ptp.3558.1.A1_atCV236792hypothetical protein-3e-17At5g34940AtGUS3 (Arabidopsis thaliana glucuronidase 3)C.G.S.X.
0.056e-446PtpAffx.214528.1.S1_atpmrna28241hypothetical protein-2e-19At5g34940AtGUS3 (Arabidopsis thaliana glucuronidase 3)C.G.S.X.
0.056e-446PtpAffx.214528.1.S1_x_atpmrna28241hypothetical protein-2e-19At5g34940AtGUS3 (Arabidopsis thaliana glucuronidase 3)C.G.S.X.
0.031e-138PtpAffx.214214.1.S1_atpmrna27658hypothetical protein-2e-19At5g34940AtGUS3 (Arabidopsis thaliana glucuronidase 3)C.G.S.X.
0.022e+034PtpAffx.2664.1.S1_atCV241458hypothetical protein-4e-1At5g56170-C.G.S.X.
0.012e+034PtpAffx.223276.1.S1_atpmrna41193hypothetical protein-2e-63At1g10320U2 snRNP auxiliary factor-relatedC.G.S.X.
0.012e+034PtpAffx.201290.1.S1_atpmrna2561hypothetical protein-7e-16At5g55820unknown proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.199e-21101Arabidopsis thalianaAt5g07830830676AtGUS2 (Arabidopsis thaliana glucuronidase 2)Belongs to the plant glycoside hydrolase family 79. Encodes a protein with several posttranslational modification sites including O-β-GlcNAc attachment sites and serine-, threonine- and tyrosine-phosphorylation sites, suggesting that this protein is extensively modified posttranslationally. The protein is predicted (WoLF PSORT program) to be membrane-associated.---C.G.S.X.
0.343e-27123Glycine maxGmaAffx.91983.1.S1_s_atCF807708--9e-2At5g61250AtGUS1 (Arabidopsis thaliana glucuronidase 1)C.G.S.X.
0.093e-342Hordeum vulgareContig10851_atContig10851--2e-1At5g34940AtGUS3 (Arabidopsis thaliana glucuronidase 3)C.G.S.X.
0.051e-552Oryza sativaOs06g0179000AK065263.1-Glycoside hydrolase, family 79, N-terminal domaincontaining protein3e-1At5g34940AtGUS3 (Arabidopsis thaliana glucuronidase 3)C.G.S.X.
0.052e-344Triticum aestivumTaAffx.114773.1.S1_atBQ802653--3e-1At5g34940AtGUS3 (Arabidopsis thaliana glucuronidase 3)C.G.S.X.
0.452e-80297Vitis vinifera1619954_atCB974333hypothetical protein LOC100257028-7e-16At5g07830AtGUS2 (Arabidopsis thaliana glucuronidase 2)C.G.S.X.
0.023e+032Zea maysZm.1941.1.S1_atAW519856hypothetical protein LOC100278594-4e+0At5g37200zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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