Gene omics information

Query gene ID	PtpAffx.5999.1.S1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.2	PtpAffx.5999.1.S1_s_at	BU894039	hypothetical protein	-	3e-14	At5g42720	glycosyl hydrolase family 17 protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	Ptp.6732.1.S1_at	CK111922	histone 2	-	2e-27	At3g54560	HTA11	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	Ptp.1743.1.A1_a_at	CV271562	hypothetical protein	-	3e-45	At4g26300	emb1027 (embryo defective 1027)	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	Ptp.4446.1.A1_s_at	CV257969	hypothetical protein	-	2e-118	At5g11170	ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding	S.X.	H.G.	Please selecteFP Browser (expression)
0.32	55.2	Ptp.8141.1.S1_at	CV250890	hypothetical protein	-	2e-83	At5g08290	YLS8	S.X.	H.G.	Please selecteFP Browser (expression)
0.15	25.3	Ptp.2290.1.S1_x_at	CV278722	hypothetical protein	-	6e-28	At1g09590	60S ribosomal protein L21 (RPL21A)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.4	94.0	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM372045	Clone1979_LPI5_N+_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM372043	Clone1979_LPI5_N-_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.6	84.5	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.6	84.5	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.43	1e-177	623	Ptp.2728.1.S1_at	CV241162	hypothetical protein	-	5e-14	At5g42720	glycosyl hydrolase family 17 protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.35	2e-124	446	PtpAffx.114748.1.A1_at	CV245313	hypothetical protein	-	3e-14	At5g42720	glycosyl hydrolase family 17 protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.11	4e-45	182	Ptp.1743.1.A1_a_at	CV271562	hypothetical protein	-	3e-45	At4g26300	emb1027 (embryo defective 1027)	C.G.	S.X.	Please selecteFP Browser (expression)
0.23	1e-23	111	PtpAffx.23037.1.A1_at	CV232626	-	-	2e-7	At4g34480	catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds	C.G.	S.X.	Please selecteFP Browser (expression)
0.23	2e-19	97	PtpAffx.135403.1.S1_s_at	BU893525	hypothetical protein	-	6e-4	At4g34480	catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds	C.G.	S.X.	Please selecteFP Browser (expression)
0.20	3e-15	83	PtpAffx.224410.1.S1_at	pmrna42909	hypothetical protein	-	3e-3	At4g34480	catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds	C.G.	S.X.	Please selecteFP Browser (expression)
0.23	3e-15	83	Ptp.4747.1.A1_x_at	CV267614	-	-	2e-3	At4g34480	catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds	C.G.	S.X.	Please selecteFP Browser (expression)
0.23	3e-15	83	Ptp.4747.1.A1_s_at	CV267614	hypothetical protein	-	2e-3	At4g34480	catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	4e-2	40	PtpAffx.208970.1.S1_at	pmrna17779	hypothetical protein	-	1e-19	At1g25550	myb family transcription factor	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	3e-14	79	Arabidopsis thaliana	At5g42720	834281	glycosyl hydrolase family 17 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;PFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	3e-9	63	Glycine max	Gma.8371.1.S1_at	CD399193	-	-	1e-14	At4g34480	catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds	C.G.	S.X.	Please select
0.03	9e-1	34	Hordeum vulgare	HS08F16u_at	HS08F16u	-	-	2e+0	At1g47265	unknown protein	C.G.	S.X.	Please select
0.02	4e-3	44	Oryza sativa	Os06g0607000	AK121115.1	-	Beta-1,3-glucanase-like protein	1e-3	At2g26600	glycosyl hydrolase family 17 protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e-1	38	Triticum aestivum	TaAffx.79383.1.S1_at	CA716967	-	-	6e-2	At1g49010	myb family transcription factor	C.G.	S.X.	Please select
0.09	2e-10	65	Vitis vinifera	1618409_at	CF514784	hypothetical protein LOC100257325	-	1e-1	At4g34480	catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds	C.G.	S.X.	Please select
0.03	2e-1	36	Zea mays	Zm.7543.1.A1_at	CD997722	hypothetical protein LOC100192002	-	4e-6	At1g66530	arginyl-tRNA synthetase, putative / arginine--tRNA ligase, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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