Gene omics information

Query gene ID	PtpAffx.59972.2.S1_a_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.75	94.1	PtpAffx.59972.2.S1_a_at	CX169696	hypothetical protein	-	2e-9	At1g48160	signal recognition particle 19 kDa protein, putative / SRP19, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.46	73.7	PtpAffx.126565.1.S1_at	CV228828	hypothetical protein	-	8e-15	At1g78895	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.30919.1.A1_s_at	CV256221	hypothetical protein	-	1e-16	At1g71270	POK (POKY POLLEN TUBE)	S.X.	H.G.	Please selecteFP Browser (expression)
0.43	69.7	PtpAffx.7001.1.S1_s_at	CK319400	hypothetical protein	-	2e+0	At2g34570	MEE21 (maternal effect embryo arrest 21)	S.X.	H.G.	Please selecteFP Browser (expression)
0.43	69.7	PtpAffx.2885.1.S1_at	CV271712	hypothetical protein	-	9e-49	At5g10780	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.119807.1.S1_a_at	CX655063	hypothetical protein	-	7e-16	At1g48550	vacuolar protein sorting-associated protein 26 family protein / VPS26 family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.20	34.6	PtpAffx.48817.3.S1_a_at	CV262816	hypothetical protein	-	5e-101	At3g14100	oligouridylate-binding protein, putative	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.6	94.5	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.0	92.9	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.50	5e-137	488	PtpAffx.41339.1.S1_at	CV276294	hypothetical protein	-	3e-11	At1g48160	signal recognition particle 19 kDa protein, putative / SRP19, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e-1	38	PtpAffx.205618.1.S1_at	pmrna11093	hypothetical protein	-	2e-1	At3g29430	geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e-1	38	PtpAffx.205616.1.S1_s_at	pmrna11089	hypothetical protein	-	2e-1	At5g37170	O-methyltransferase family 2 protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e-1	38	PtpAffx.205616.1.S1_at	pmrna11089	hypothetical protein	-	2e-1	At5g37170	O-methyltransferase family 2 protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	6e-1	36	PtpAffx.223476.1.S1_at	pmrna41505	hypothetical protein	-	8e-3	At2g22610	kinesin motor protein-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	6e-1	36	PtpAffx.223476.1.S1_x_at	pmrna41505	hypothetical protein	-	8e-3	At2g22610	kinesin motor protein-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e-1	36	PtpAffx.215098.1.S1_s_at	pmrna29074	hypothetical protein	-	2e+0	At5g67400	peroxidase 73 (PER73) (P73) (PRXR11)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	6e-1	36	PtpAffx.206540.1.S1_at	pmrna12974	hypothetical protein	-	8e-36	At4g28080	binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	6e-1	36	PtpAffx.206540.1.S1_x_at	pmrna12974	hypothetical protein	-	8e-36	At4g28080	binding	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.16	2e-9	63	Arabidopsis thaliana	At1g48160	841235	signal recognition particle 19 kDa protein, putative / SRP19, putative	F:7S RNA binding;P:protein targeting, SRP-dependent cotranslational protein targeting to membrane;C:signal recognition particle, signal recognition particle, endoplasmic reticulum targeting;MFAOP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.12	1e-1	38	Glycine max	Gma.4104.1.S1_at	BI701259	-	-	1e+0	At4g00280	-	C.G.	S.X.	Please select
0.03	3e+0	32	Hordeum vulgare	EBpi01_SQ002_P23_at	EBpi01_SQ002_P23	-	-	2e-1	At4g15650	protein kinase-related	C.G.	S.X.	Please select
0.03	2e-4	48	Oryza sativa	Os06g0342100	U19030.1	-	Ribonucleoprotein complex SRP, Srp19 componentfamily protein	1e-1	At3g48710	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e-1	36	Triticum aestivum	TaAffx.21755.1.S1_at	BG908321	-	-	1e+1	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	C.G.	S.X.	Please select
0.41	2e-46	184	Vitis vinifera	1619575_at	BQ793880	-	-	1e-3	At1g48160	signal recognition particle 19 kDa protein, putative / SRP19, putative	C.G.	S.X.	Please select
0.02	7e-1	34	Zea mays	Zm.1546.2.S1_a_at	CB411210	hypothetical protein LOC100278775	-	3e-4	At1g15270	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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