Gene omics information

Query gene ID PtpAffx.59940.1.S1_s_at
Gene name
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.4471.9PtpAffx.59940.1.S1_s_atCX657241--1e-3At2g43580chitinase, putativeS.X.H.G.
0.5582.2PtpAffx.217430.1.S1_s_atpmrna32684hypothetical protein-5e+0At4g02520ATGSTF2 (GLUTATHIONE S-TRANSFERASE PHI 2)S.X.H.G.
0.5582.2PtpAffx.214983.1.S1_s_atpmrna28919hypothetical protein-3e-1At4g31960unknown proteinS.X.H.G.
0.5078.6PtpAffx.217705.1.S1_x_atpmrna33069hypothetical protein-8e-142Atcg01250-S.X.H.G.
0.3661.6PtpAffx.215857.1.S1_x_atpmrna30280--4e+0At3g18940clast3-relatedS.X.H.G.
0.2340.5PtpAffx.217524.1.S1_s_atpmrna32819hypothetical protein-0Atcg01280-S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
18.599.7GSM327406Populus balsamifera_1006_young_leaf_midday_3GSE13990Populus balsamifera developmental tissue series
14.199.4GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue series
12.999.3GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue series
6.297.6GSM328062Populus x canescens leaf control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
4.696.2GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue series
3.995.1GSM372045Clone1979_LPI5_N+_8w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.694.5GSM328274Populus x canescens leaf hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
3.193.2GSM372044Clone1979_LPI5_N+_8w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.289.3GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplar
2.088.0GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue series
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.7701033Ptp.7001.1.S1_atCX655784hypothetical protein-3e-5At2g43590chitinase, putativeC.G.S.X.
0.571e-78293PtpAffx.225260.1.S1_atpmrna44483hypothetical protein-4e-13At3g54420ATEP3C.G.S.X.
0.123e-1169Ptp.987.1.S1_atBU895364--5e-29At3g54420ATEP3C.G.S.X.
0.078e-961PtpAffx.4.3.A1_x_atCV277108--6e-2At3g12500ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)C.G.S.X.
0.088e-961PtpAffx.4.1.A1_a_atU01660.1hypothetical protein-4e-2At3g12500ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)C.G.S.X.
0.233e-550Ptp.4069.1.A1_atCA931925hypothetical protein-4e-8At3g54420ATEP3C.G.S.X.
0.182e-344PtpAffx.160343.1.A1_atCV237835--3e+0At3g16820F-box family proteinC.G.S.X.
0.033e-240PtpAffx.77318.2.S1_atCX658035hypothetical protein-5e-4At3g12500ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)C.G.S.X.
0.041e-138PtpAffx.29026.1.S1_atCK114083--7e+0At4g36560unknown proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.091e-344Arabidopsis thalianaAt2g43580818960chitinase, putativeF:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBFOMV---C.G.S.X.
0.092e-654Glycine maxGmaAffx.89972.1.S1_s_atCF805697--6e-5At2g43590chitinase, putativeC.G.S.X.
0.034e-238Hordeum vulgareContig3480_atContig3480--4e-1At5g16660unknown proteinC.G.S.X.
0.043e+034Oryza sativaOs04g02979009632.m02147--1e+0At4g11190disease resistance-responsive family protein / dirigent family proteinC.G.S.X.
0.086e-652Triticum aestivumTa.1929.1.S1_atCK212185--4e-5At2g43610glycoside hydrolase family 19 proteinC.G.S.X.
0.233e-1787Vitis vinifera1606625_atCF603972hypothetical protein LOC100257850-1e-1At2g43590chitinase, putativeC.G.S.X.
0.041e-240Zea maysZm.11654.1.A1_atCK347373hypothetical protein LOC100280135-1e-5At3g54420ATEP3C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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