CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.59940.1.S1_s_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.44 71.9 PtpAffx.59940.1.S1_s_at CX657241 - - 1e-3 At2g43580 chitinase, putative S.X. H.G.
0.55 82.2 PtpAffx.217430.1.S1_s_at pmrna32684 hypothetical protein - 5e+0 At4g02520 ATGSTF2 (GLUTATHIONE S-TRANSFERASE PHI 2) S.X. H.G.
0.55 82.2 PtpAffx.214983.1.S1_s_at pmrna28919 hypothetical protein - 3e-1 At4g31960 unknown protein S.X. H.G.
0.50 78.6 PtpAffx.217705.1.S1_x_at pmrna33069 hypothetical protein - 8e-142 Atcg01250 - S.X. H.G.
0.36 61.6 PtpAffx.215857.1.S1_x_at pmrna30280 - - 4e+0 At3g18940 clast3-related S.X. H.G.
0.23 40.5 PtpAffx.217524.1.S1_s_at pmrna32819 hypothetical protein - 0 Atcg01280 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
18.5 99.7 GSM327406 Populus balsamifera_1006_young_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
14.1 99.4 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
12.9 99.3 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
6.2 97.6 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.6 96.2 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.9 95.1 GSM372045 Clone1979_LPI5_N+_8w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.6 94.5 GSM328274 Populus x canescens leaf hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.1 93.2 GSM372044 Clone1979_LPI5_N+_8w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2 89.3 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.0 88.0 GSM334226 Populus balsamifera_1006_mature_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.77 0 1033 Ptp.7001.1.S1_at CX655784 hypothetical protein - 3e-5 At2g43590 chitinase, putative C.G. S.X.
0.57 1e-78 293 PtpAffx.225260.1.S1_at pmrna44483 hypothetical protein - 4e-13 At3g54420 ATEP3 C.G. S.X.
0.12 3e-11 69 Ptp.987.1.S1_at BU895364 - - 5e-29 At3g54420 ATEP3 C.G. S.X.
0.07 8e-9 61 PtpAffx.4.3.A1_x_at CV277108 - - 6e-2 At3g12500 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) C.G. S.X.
0.08 8e-9 61 PtpAffx.4.1.A1_a_at U01660.1 hypothetical protein - 4e-2 At3g12500 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) C.G. S.X.
0.23 3e-5 50 Ptp.4069.1.A1_at CA931925 hypothetical protein - 4e-8 At3g54420 ATEP3 C.G. S.X.
0.18 2e-3 44 PtpAffx.160343.1.A1_at CV237835 - - 3e+0 At3g16820 F-box family protein C.G. S.X.
0.03 3e-2 40 PtpAffx.77318.2.S1_at CX658035 hypothetical protein - 5e-4 At3g12500 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) C.G. S.X.
0.04 1e-1 38 PtpAffx.29026.1.S1_at CK114083 - - 7e+0 At4g36560 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 1e-3 44 Arabidopsis thaliana At2g43580 818960 chitinase, putative F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBFOMV - - - C.G. S.X.
0.09 2e-6 54 Glycine max GmaAffx.89972.1.S1_s_at CF805697 - - 6e-5 At2g43590 chitinase, putative C.G. S.X.
0.03 4e-2 38 Hordeum vulgare Contig3480_at Contig3480 - - 4e-1 At5g16660 unknown protein C.G. S.X.
0.04 3e+0 34 Oryza sativa Os04g0297900 9632.m02147 - - 1e+0 At4g11190 disease resistance-responsive family protein / dirigent family protein C.G. S.X.
0.08 6e-6 52 Triticum aestivum Ta.1929.1.S1_at CK212185 - - 4e-5 At2g43610 glycoside hydrolase family 19 protein C.G. S.X.
0.23 3e-17 87 Vitis vinifera 1606625_at CF603972 hypothetical protein LOC100257850 - 1e-1 At2g43590 chitinase, putative C.G. S.X.
0.04 1e-2 40 Zea mays Zm.11654.1.A1_at CK347373 hypothetical protein LOC100280135 - 1e-5 At3g54420 ATEP3 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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