Gene omics information

Query gene ID	PtpAffx.5989.2.S1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.51	78.9	PtpAffx.5989.2.S1_s_at	CV259773	hypothetical protein	-	6e-8	At5g25880	ATNADP-ME3 (NADP-malic enzyme 3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.61	87.0	Ptp.3568.1.S1_at	DN493064	hypothetical protein	-	8e-16	At4g24290	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.56	83.9	PtpAffx.212083.1.S1_at	pmrna23708	hypothetical protein	-	9e-1	At5g14930	SAG101 (SENESCENCE-ASSOCIATED GENE 101)	S.X.	H.G.	Please selecteFP Browser (expression)
0.53	80.5	PtpAffx.162546.1.A1_at	CV272261	hypothetical protein	-	1e-3	At5g52600	AtMYB82 (myb domain protein 82)	S.X.	H.G.	Please selecteFP Browser (expression)
0.47	74.6	PtpAffx.32930.1.A1_at	CK095139	hypothetical protein	-	2e-1	At1g14185	glucose-methanol-choline (GMC) oxidoreductase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.9177.1.S1_at	CK105027	-	-	3e-1	At4g08260	protein phosphatase 2C, putative / PP2C, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.42	68.6	PtpAffx.57544.1.A1_at	CV266909	-	-	3e-1	At3g07920	translation initiation factor	S.X.	H.G.	Please selecteFP Browser (expression)
0.35	59.7	PtpAffx.208122.1.S1_at	pmrna16132	hypothetical protein	-	2e+0	At1g22510	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.30	52.0	PtpAffx.147936.1.S1_s_at	BP924717	hypothetical protein	-	1e-21	At5g48230	ACAT2 (ACETOACETYL-COA THIOLASE 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.30	52.0	PtpAffx.225395.1.S1_s_at	pmrna44716	hypothetical protein	-	3e-5	At1g61430	S-locus protein kinase, putative	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
24.7	99.8	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
9.6	98.9	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
9.0	98.7	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.1	96.8	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.6	96.2	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.96	0	765	PtpAffx.5989.2.S1_at	CV259773	-	-	6e-8	At5g25880	ATNADP-ME3 (NADP-malic enzyme 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.24	3e-161	567	PtpAffx.206712.1.S1_at	pmrna13321	hypothetical protein	-	7e-122	At5g25880	ATNADP-ME3 (NADP-malic enzyme 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.21	2e-51	202	PtpAffx.5989.1.S1_s_at	CV226163	hypothetical protein	-	5e-38	At5g11670	ATNADP-ME2 (NADP-malic enzyme 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.19	3e-4	46	PtpAffx.32354.3.S1_at	CV226655	-	-	5e-2	At5g25880	ATNADP-ME3 (NADP-malic enzyme 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	1e-3	44	Ptp.5508.1.S1_s_at	X56233.1	hypothetical protein	-	1e-74	At2g19900	ATNADP-ME1 (NADP-malic enzyme 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	1e+0	34	PtpAffx.63346.1.A1_at	CV243969	-	-	2e-2	At1g10150	carbohydrate binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	1e+0	34	PtpAffx.5149.2.S1_a_at	CV257760	-	-	3e-6	At1g79750	ATNADP-ME4 (NADP-malic enzyme 4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	1e+0	34	Ptp.4975.1.S1_at	DN500659	-	-	4e+0	At4g07825	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e+0	34	Ptp.4112.1.S1_at	CV237812	-	-	2e-4	At2g35720	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	6e-8	57	Arabidopsis thaliana	At5g25880	832657	ATNADP-ME3 (NADP-malic enzyme 3)	The malic enzyme (EC 1.1.1.40) encoded by the ATNADP-ME3 is presumably cytosolic and restricted in its expression by both developmental and cell-specific signals.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.20	4e-22	105	Glycine max	Gma.7631.1.A1_at	AW309495	-	-	4e-13	At5g11670	ATNADP-ME2 (NADP-malic enzyme 2)	C.G.	S.X.	Please select
0.21	4e-10	63	Hordeum vulgare	HVSMEi0006K11r2_s_at	HVSMEi0006K11r2	-	-	6e-2	At2g19900	ATNADP-ME1 (NADP-malic enzyme 1)	C.G.	S.X.	Please select
0.07	4e-7	56	Oryza sativa	Os01g0743500	AY444338.1	-	NADP-dependent malic enzyme (EC 1.1.1.40)(NADP-ME)	3e-47	At5g11670	ATNADP-ME2 (NADP-malic enzyme 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.20	4e-6	52	Triticum aestivum	Ta.15775.1.S1_at	CA486828	-	-	3e-6	At5g25880	ATNADP-ME3 (NADP-malic enzyme 3)	C.G.	S.X.	Please select
0.06	3e-7	54	Vitis vinifera	1610626_at	U67426.1	malate dehydrogenase	-	4e-71	At1g79750	ATNADP-ME4 (NADP-malic enzyme 4)	C.G.	S.X.	Please select
0.07	9e-5	46	Zea mays	Zm.16860.1.A1_at	CF648633	-	-	4e-4	At1g79750	ATNADP-ME4 (NADP-malic enzyme 4)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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