Gene omics information

Query gene ID	PtpAffx.5931.1.A1_a_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.48	75.4	PtpAffx.5931.1.A1_a_at	AJ779880	hypothetical protein	-	1e-1	At5g48950	thioesterase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.47	74.6	PtpAffx.209318.1.S1_at	pmrna18412	hypothetical protein	-	5e-35	At2g39830	DAR2 (DA1-RELATED PROTEIN 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.151315.1.S1_at	BU881641	hypothetical protein	-	6e-9	At2g48020	sugar transporter, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.26	45.2	PtpAffx.35226.1.S1_at	CV274935	hypothetical protein	-	1e-7	At5g58090	glycosyl hydrolase family 17 protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.19	32.7	PtpAffx.3955.2.S1_at	BU881273	hypothetical protein	-	2e-2	At3g54240	hydrolase, alpha/beta fold family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.13	21.6	PtpAffx.222439.1.S1_at	pmrna39840	aldehyde oxidase 2	-	1e-26	At1g04580	AAO4 (ARABIDOPSIS ALDEHYDE OXIDASE 4)	S.X.	H.G.	Please selecteFP Browser (expression)
0.07	11.6	PtpAffx.220066.1.S1_at	pmrna36353	hypothetical protein	-	2e-42	At4g17770	ATTPS5	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.9	98.4	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
6.2	97.6	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
5.8	97.4	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
5.5	97.1	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.6	96.2	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.0	95.3	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.7	94.7	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.6	94.5	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.2	93.5	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.8	92.1	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.39	1e-122	440	PtpAffx.5931.2.S1_a_at	CV275358	hypothetical protein	-	6e+0	At5g42330	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e-1	38	PtpAffx.206290.1.S1_s_at	pmrna12471	hypothetical protein	-	3e-6	At5g05830	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e-1	38	PtpAffx.206290.1.S1_at	pmrna12471	hypothetical protein	-	3e-6	At5g05830	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e-1	36	PtpAffx.63290.1.A1_at	CV245755	hypothetical protein	-	3e-2	At4g04580	myb family transcription factor	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e-1	36	PtpAffx.49767.2.A1_at	CK095613	hypothetical protein	-	2e+0	At5g19230	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e-1	36	PtpAffx.49767.2.A1_a_at	CK095613	hypothetical protein	-	2e+0	At5g19230	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e-1	36	PtpAffx.224622.1.S1_at	pmrna43332	hypothetical protein	-	3e-24	At5g49100	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e-1	36	PtpAffx.208057.1.S1_at	pmrna15992	hypothetical protein	-	5e-2	At1g15000	scpl50 (serine carboxypeptidase-like 50)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	6e-1	36	PtpAffx.207983.1.S1_at	pmrna15848	hypothetical protein	-	6e-82	At1g68750	ATPPC4	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	1e-1	38	Arabidopsis thaliana	At5g48950	834953	thioesterase family protein	F:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:cellular_component unknown;BOP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.18	1e-5	52	Glycine max	GmaAffx.3706.1.S1_at	BE821261	-	-	4e-10	At1g48320	thioesterase family protein	C.G.	S.X.	Please select
0.09	8e-1	34	Hordeum vulgare	Contig12737_at	Contig12737	-	-	2e-3	At5g48950	thioesterase family protein	C.G.	S.X.	Please select
0.08	3e-6	54	Oryza sativa	Os03g0691400	AK071319.1	-	Thioesterase superfamily domain containing protein	1e-4	At5g48950	thioesterase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Triticum aestivum	TaAffx.107075.1.S1_at	CA706613	-	-	5e-2	At5g37550	unknown protein	C.G.	S.X.	Please select
0.10	1e-4	46	Vitis vinifera	1621137_at	CB975552	hypothetical protein LOC100259669	-	1e-1	At1g48320	thioesterase family protein	C.G.	S.X.	Please select
0.08	2e-4	46	Zea mays	Zm.18012.1.A1_at	CK827313	-	-	2e-3	At5g48950	thioesterase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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