Gene omics information

Query gene ID	PtpAffx.5890.2.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	78.6	PtpAffx.5890.2.S1_at	CF232083	hypothetical protein	-	5e-3	At5g17770	ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.73	93.6	PtpAffx.756.2.S1_a_at	DN496305	hypothetical protein	-	2e-6	At2g16790	shikimate kinase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.71	92.6	PtpAffx.4971.2.S1_a_at	CV252275	hypothetical protein	-	3e-49	At5g08160	ATPK3	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.123565.1.S1_at	BU829458	hypothetical protein	-	9e-36	At1g36050	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.59	84.9	Ptp.4857.2.S1_s_at	CK095641	hypothetical protein	-	2e-9	At5g25360	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	Ptp.5648.1.A1_at	CV230085	hypothetical protein	-	1e-7	At3g16480	MPPalpha (mitochondrial processing peptidase alpha subunit)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.9	99.1	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
8.6	98.6	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
7.6	98.3	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.7	96.3	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.6	84.5	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.5	83.5	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1092	PtpAffx.5890.2.S1_a_at	CF232083	hypothetical protein	-	5e-3	At5g17770	ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.45	2e-148	525	PtpAffx.5890.1.S1_at	CV230515	hypothetical protein	-	4e-15	At5g17770	ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.21	2e-6	54	Ptp.2560.1.S1_s_at	CV270621	hypothetical protein	-	1e-65	At5g17770	ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.18	7e-6	52	Ptp.2560.2.S1_a_at	BU835696	hypothetical protein	-	3e-67	At5g17770	ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.20	4e-4	46	Ptp.7072.1.S1_s_at	CA926150	hypothetical protein	-	1e-62	At5g17770	ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	4e-1	36	PtpAffx.222889.1.S1_at	pmrna40603	hypothetical protein	-	3e-9	At4g27290	ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.89390.1.A1_at	CV227168	hypothetical protein	-	2e+0	At4g22140	DNA binding / protein binding / zinc ion binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.224795.1.S1_at	pmrna43647	hypothetical protein	-	5e-5	At5g44360	FAD-binding domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.209120.1.S1_at	pmrna18047	hypothetical protein	-	2e-12	At1g13820	hydrolase, alpha/beta fold family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	5e-3	42	Arabidopsis thaliana	At5g17770	831645	ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)	Encodes NADH:cytochrome (Cyt) b5 reductase that displayed strict specificity to NADH for the reduction of a recombinant Cyt b5 (AtB5-A), whereas no Cyt b5 reduction was observed when NADPH was used as the electron donor.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.20	2e-21	103	Glycine max	GmaAffx.91300.1.S1_s_at	CF805768	-	-	9e-67	At5g17770	ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)	C.G.	S.X.	Please select
0.23	2e-25	115	Hordeum vulgare	Contig7709_at	Contig7709	-	-	9e-25	At5g17770	ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)	C.G.	S.X.	Please select
0.22	1e-14	81	Oryza sativa	Os05g0488900	AK071883.1	-	Cytochrome b5 reductase	5e-20	At5g17770	ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.22	6e-21	101	Triticum aestivum	Ta.6627.1.S1_at	AF542186.1	-	-	2e-9	At5g17770	ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)	C.G.	S.X.	Please select
0.33	4e-41	167	Vitis vinifera	1621689_at	CF212507	hypothetical protein LOC100263819	-	3e-70	At5g17770	ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)	C.G.	S.X.	Please select
0.14	1e-20	99	Zea mays	Zm.428.1.S1_at	AF077372.1	hypothetical protein LOC100191335	-	8e-16	At5g17770	ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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