Gene omics information

Query gene ID PtpAffx.58803.1.S1_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.8397.0PtpAffx.58803.1.S1_atCK090504hypothetical protein-4e-7At1g72970HTH (HOTHEAD)S.X.H.G.
0.9199.2PtpAffx.202805.1.S1_atpmrna5565hypothetical protein-3e-5At3g06470GNS1/SUR4 membrane family proteinS.X.H.G.
0.8096.0PtpAffx.8720.2.S1_s_atCV233523hypothetical protein-2e-2At5g45670GDSL-motif lipase/hydrolase family proteinS.X.H.G.
0.7794.9PtpAffx.65229.1.A1_atCK088834--8e-1At3g53820zinc finger (C2H2 type) family proteinS.X.H.G.
0.7192.6PtpAffx.222585.1.S1_atpmrna40114hypothetical protein-7e+0At4g35280zinc finger (C2H2 type) family proteinS.X.H.G.
0.6791.1PtpAffx.211922.1.S1_atpmrna23414hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein-2e-1At5g41040transferase family proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
56.5100.0GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue series
20.999.8GSM327406Populus balsamifera_1006_young_leaf_midday_3GSE13990Populus balsamifera developmental tissue series
10.899.1GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue series
0.872.0GSM328274Populus x canescens leaf hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
0.563.3GSM328275Populus x canescens leaf hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplar
0.563.3GSM328063Populus x canescens leaf control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplar
0.355.0GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
0.355.0GSM327402Populus balsamifera_20071015_Etiolated_seedling_6d_2GSE13990Populus balsamifera developmental tissue series
0.355.0GSM328070Populus x canescens leaf control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplar
0.355.0GSM362884Clone1979_LPI2_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.590956PtpAffx.221521.1.S1_atpmrna38448hypothetical protein-2e-11At1g72970HTH (HOTHEAD)C.G.S.X.
0.104e-1789PtpAffx.1963.1.A1_atBU833907--5e-2At5g26140lysine decarboxylase family proteinC.G.S.X.
0.021e-138PtpAffx.31750.1.A1_atCV273731hypothetical protein-4e-11At2g17970oxidoreductase, 2OG-Fe(II) oxygenase family proteinC.G.S.X.
0.016e-136PtpAffx.212682.1.S1_atpmrna24799hypothetical protein-1e-111At1g18370HIK (HINKEL)C.G.S.X.
0.016e-136PtpAffx.212682.1.S1_x_atpmrna24799hypothetical protein-1e-111At1g18370HIK (HINKEL)C.G.S.X.
0.036e-136PtpAffx.212150.1.S1_atpmrna23827hypothetical protein-4e-2At3g04340emb2458 (embryo defective 2458)C.G.S.X.
0.026e-136PtpAffx.202671.1.S1_atpmrna5326hypothetical protein-7e-3At4g17060unknown proteinC.G.S.X.
0.026e-136PtpAffx.158598.1.S1_s_atCN524601hypothetical protein-4e-36At1g18370HIK (HINKEL)C.G.S.X.
0.012e+034PtpAffx.224520.1.S1_atpmrna43139hypothetical protein-4e-3At1g63330pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.134e-756Arabidopsis thalianaAt1g72970843628HTH (HOTHEAD)Originally identified as a mutation that causes floral organs to fuse together. About 10-20% of mutants also have defects in ovules. Mutants have reduced fertility most likely as because of fusions that pistil emergence. The protein has similarity to the mandelonitrile lyase family of FAD containing oxidoreductases and is predicted to be secreted (SignalP).It is expressed in all tissue layers of roots, inflorescences, stems, leaves, and flowers and is also expressed in siliques. Expression is highest in inflorescence and flower tissue.Transmission of mutant alleles to the progeny shows non mendelian segregation- a percentage of mutant alleles revert back to a previous parental (e.g. grandparental) wild type allele. It has been suggested that an RNA template driven or other extra-DNA genomic mechanism may be responsible for the non-mendelian inheritance of HTH. Reversion events in alleles at other loci have also been observed to occur in plants with an hth mutant background indicating a genome wide effect.---C.G.S.X.
0.182e-25117Glycine maxGma.10072.1.S1_atCD399353--1e-11At1g72970HTH (HOTHEAD)C.G.S.X.
0.085e-857Hordeum vulgareContig2265_atContig2265--4e-3At1g72970HTH (HOTHEAD)C.G.S.X.
0.123e-654Oryza sativaOs09g0363900AK072899.1-Mandelonitrile lyase-like protein1e-3At1g72970HTH (HOTHEAD)C.G.S.X.
0.094e-756Triticum aestivumTa.3651.1.S1_atCK152094--1e-3At1g12570glucose-methanol-choline (GMC) oxidoreductase family proteinC.G.S.X.
0.065e-754Vitis vinifera1622345_atCB970837hypothetical protein LOC100266705-3e-14At1g73050(R)-mandelonitrile lyase, putative / (R)-oxynitrilase, putativeC.G.S.X.
0.163e-1271Zea maysZm.1657.1.A1_atBG842419hypothetical protein LOC100192014-7e-2At5g51950glucose-methanol-choline (GMC) oxidoreductase family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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