Gene omics information

Query gene ID	PtpAffx.58504.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	84.9	PtpAffx.58504.1.S1_at	CK102969	hypothetical protein	-	5e-3	At3g16850	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.108502.1.A1_a_at	BI127008	-	-	8e-30	At3g48030	hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.11	18.1	PtpAffx.202121.1.S1_at	pmrna4240	hypothetical protein	-	1e-19	At3g60240	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.05	8.3	PtpAffx.17980.4.A1_at	CV271763	-	-	4e-1	At2g34200	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.05	8.3	Ptp.375.1.A1_at	CK088699	hypothetical protein	-	4e+0	At4g26820	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.04	6.9	PtpAffx.207782.1.S1_at	pmrna15473	-	-	7e-22	At3g11040	glycosyl hydrolase family 85 protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.04	6.9	PtpAffx.215309.1.S1_at	pmrna29415	hypothetical protein	-	8e-1	At1g78020	senescence-associated protein-related	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.9	97.4	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.3	96.9	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.8	96.4	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.0	95.3	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.5	94.3	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.2	93.5	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.8	92.1	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3	89.8	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e-2	40	PtpAffx.221598.1.S1_at	pmrna38565	hypothetical protein	-	7e-7	At3g61490	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e-1	38	PtpAffx.222191.1.S1_s_at	pmrna39445	hypothetical protein	-	3e-1	At2g21220	auxin-responsive protein, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e-1	38	PtpAffx.213263.1.S1_x_at	pmrna25945	hypothetical protein	-	7e-1	At2g21220	auxin-responsive protein, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e-1	38	PtpAffx.213262.1.S1_s_at	pmrna25944	hypothetical protein	-	1e+0	At5g59300	UBC7 (UBIQUITIN CARRIER PROTEIN 7)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e-1	38	PtpAffx.207056.1.S1_at	pmrna13981	hypothetical protein	-	4e-73	At4g33440	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e-1	38	PtpAffx.202419.1.S1_at	pmrna4858	hypothetical protein	-	2e-10	At3g62110	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	4e-1	36	PtpAffx.5079.1.S1_at	CV262459	-	-	4e-1	At3g23390	60S ribosomal protein L36a/L44 (RPL36aA)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	4e-1	36	PtpAffx.211674.1.S1_at	pmrna22885	hypothetical protein	-	2e-25	At3g62110	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	4e-1	36	PtpAffx.211674.1.S1_s_at	pmrna22885	hypothetical protein	-	2e-25	At3g62110	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	5e-3	42	Arabidopsis thaliana	At3g16850	820938	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	F:polygalacturonase activity;P:carbohydrate metabolic process;C:vacuole, plant-type cell wall;PBFOMA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	7e-6	52	Glycine max	Gma.12293.1.S1_at	CD416826	-	-	7e-20	At5g49215	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	C.G.	S.X.	Please select
0.03	6e-1	34	Hordeum vulgare	Contig8101_at	Contig8101	-	-	5e-9	At3g62110	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	C.G.	S.X.	Please select
0.04	1e+1	32	Oryza sativa	OsAffx.14506.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e+0	32	Triticum aestivum	Ta.552.1.A1_at	BG906332	-	-	8e-1	At4g30370	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1619958_at	CF515517	-	-	4e+0	At3g17611	ATRBL14 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 14)	C.G.	S.X.	Please select
0.04	2e+0	32	Zea mays	Zm.2336.1.A1_at	AW355833	-	-	1e+1	At5g46800	BOU (A BOUT DE SOUFFLE)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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