CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.58146.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 78.6 PtpAffx.58146.1.S1_at CV261342 hypothetical protein - 6e-63 At5g08080 SYP132 (SYNTAXIN OF PLANTS 132) S.X. H.G.
0.67 91.1 PtpAffx.41177.1.S1_s_at DN494061 hypothetical protein - 2e+1 At5g59050 unknown protein S.X. H.G.
0.44 71.9 Ptp.4630.1.S1_at AI164519 hypothetical protein - 3e-17 At1g55530 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.40 67.0 PtpAffx.103891.1.A1_at CV254829 f-box family protein /// hypothetical protein - 5e-4 At3g61590 HWS (HAWAIIAN SKIRT) S.X. H.G.
0.27 47.1 Ptp.3339.1.S1_s_at BU815787 hypothetical protein - 5e-78 At5g54310 AGD5 (ARF-GAP domain 5) S.X. H.G.
0.24 41.8 PtpAffx.56923.1.S1_at BI123150 hypothetical protein - 2e-77 At3g24090 glutamine-fructose-6-phosphate transaminase (isomerizing)/ sugar binding / transaminase S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.9 99.1 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
7.9 98.4 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
7.8 98.4 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
7.4 98.2 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
6.5 97.8 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
6.0 97.5 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
5.2 96.8 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.7 96.3 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.4 95.9 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.5 94.3 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.21 1e-46 188 PtpAffx.211063.1.S1_at pmrna21727 hypothetical protein - 2e-4 At3g03800 SYP131 (SYNTAXIN OF PLANTS 131) C.G. S.X.
0.03 2e-5 52 PtpAffx.216866.1.S1_at pmrna31910 hypothetical protein - 1e-1 At5g08080 SYP132 (SYNTAXIN OF PLANTS 132) C.G. S.X.
0.02 7e-5 50 PtpAffx.203760.1.S1_at pmrna7429 hypothetical protein - 9e-18 At1g11250 SYP125 (SYNTAXIN OF PLANTS 125) C.G. S.X.
0.02 2e-2 42 PtpAffx.209719.1.S1_at pmrna19184 hypothetical protein - 2e-28 At1g11250 SYP125 (SYNTAXIN OF PLANTS 125) C.G. S.X.
0.01 7e-2 40 PtpAffx.224901.1.S1_at pmrna43825 BED finger-nbs-lrr resistance protein - 4e-1 At4g26950 unknown protein C.G. S.X.
0.02 7e-2 40 PtpAffx.131744.1.S1_at CK087907 hypothetical protein - 3e-55 At2g06530 VPS2.1 C.G. S.X.
0.02 7e-2 40 Ptp.3934.1.S1_at DN488806 hypothetical protein - 5e-38 At5g13240 transcription regulator C.G. S.X.
0.01 3e-1 38 PtpAffx.225713.1.S1_s_at pmrna45270 hypothetical protein - 4e-62 At5g09950 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.02 3e-1 38 PtpAffx.206229.1.S1_at pmrna12363 hypothetical protein - 3e-8 At3g52770 ZPR3 (LITTLE ZIPPER 3) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.47 6e-63 242 Arabidopsis thaliana At5g08080 830702 SYP132 (SYNTAXIN OF PLANTS 132) member of SYP13 Gene Family - - - C.G. S.X.
0.24 6e-33 143 Glycine max GmaAffx.40774.1.S1_at BG363156 - - 1e-24 At5g08080 SYP132 (SYNTAXIN OF PLANTS 132) C.G. S.X.
0.10 2e-12 73 Hordeum vulgare Contig6952_at Contig6952 - - 4e-5 At5g08080 SYP132 (SYNTAXIN OF PLANTS 132) C.G. S.X.
0.09 2e-9 65 Oryza sativa Os06g0168500 AK100316.1 - Syntaxin-like protein (Fragment) 3e-6 At3g03800 SYP131 (SYNTAXIN OF PLANTS 131) C.G. S.X.
0.12 4e-12 73 Triticum aestivum Ta.3207.2.S1_a_at CD889824 - - 4e-5 At5g08080 SYP132 (SYNTAXIN OF PLANTS 132) C.G. S.X.
0.28 1e-73 276 Vitis vinifera 1619882_at CF604338 hypothetical protein LOC100265088 - 9e-17 At5g08080 SYP132 (SYNTAXIN OF PLANTS 132) C.G. S.X.
0.07 1e-6 54 Zea mays Zm.3781.1.S1_at CD447284 syntaxin 132 - 3e-4 At1g11250 SYP125 (SYNTAXIN OF PLANTS 125) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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