CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.58139.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.53 80.5 PtpAffx.58139.1.S1_at CV269192 hypothetical protein - 6e-22 At2g01610 invertase/pectin methylesterase inhibitor family protein S.X. H.G.
0.91 99.2 PtpAffx.75119.1.A1_at CV255144 - - 2e+0 At5g64880 unknown protein S.X. H.G.
0.63 88.1 Ptp.1394.1.A1_at CV255243 - - 2e-15 At1g19600 pfkB-type carbohydrate kinase family protein S.X. H.G.
0.57 84.2 PtpAffx.206129.1.S1_at pmrna12161 hypothetical protein - 1e-43 At2g41900 zinc finger (CCCH-type) family protein S.X. H.G.
0.46 73.7 PtpAffx.129522.1.A1_at CV243327 hypothetical protein - 6e-25 At3g20910 NF-YA9 (NUCLEAR FACTOR Y, SUBUNIT A9) S.X. H.G.
0.38 63.7 PtpAffx.160374.1.A1_at CV243058 hypothetical protein - 3e-22 At2g25280 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
22.2 99.8 GSM327380 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1 GSE13990 Populus balsamifera developmental tissue series
16.7 99.6 GSM327398 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3 GSE13990 Populus balsamifera developmental tissue series
10.1 99.0 GSM327406 Populus balsamifera_1006_young_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
9.0 98.7 GSM327397 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2 GSE13990 Populus balsamifera developmental tissue series
5.0 96.6 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.9 95.1 GSM327281 Populus balsamifera_20071015_Seedling_continuous_light_6d_1 GSE13990 Populus balsamifera developmental tissue series
3.8 94.9 GSM327358 Populus balsamifera_20071015_Seedling_continuous_light_6d_2 GSE13990 Populus balsamifera developmental tissue series
2.6 91.3 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.3 89.8 GSM327359 Populus balsamifera_20071015_Seedling_continuous_light_6d_3 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.60 4e-147 521 Ptp.4723.1.S1_s_at CK092678 hypothetical protein - 5e-13 At2g01610 invertase/pectin methylesterase inhibitor family protein C.G. S.X.
0.01 2e-1 38 PtpAffx.209932.1.S1_at pmrna19582 hypothetical protein - 1e+0 At1g68185 ubiquitin-related C.G. S.X.
0.02 2e-1 38 PtpAffx.1139.1.S1_a_at CV244258 hypothetical protein - 8e-14 At5g09830 BolA-like family protein C.G. S.X.
0.02 7e-1 36 PtpAffx.49949.1.S1_at CV264862 hypothetical protein - 1e-20 At2g31400 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.03 7e-1 36 PtpAffx.10288.2.A1_at CV242122 - - 5e+0 Atmg01200 - C.G. S.X.
0.03 3e+0 34 PtpAffx.68917.1.S1_at CV254830 hypothetical protein - 5e-6 At5g67520 adenylylsulfate kinase, putative C.G. S.X.
0.02 3e+0 34 PtpAffx.5588.1.A1_at CV242974 - - 2e+0 At2g35360 ubiquitin family protein C.G. S.X.
0.03 3e+0 34 PtpAffx.41718.1.S1_at BU881184 hypothetical protein - 3e-12 At1g74070 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein C.G. S.X.
0.01 3e+0 34 PtpAffx.39908.2.S1_at CN521103 hypothetical protein - 3e-139 At1g10430 PP2A-2 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 6e-22 105 Arabidopsis thaliana At2g01610 814690 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P - - - C.G. S.X.
0.10 5e-8 59 Glycine max GmaAffx.6824.1.S1_at AI416876 - - 3e-5 At1g14890 enzyme inhibitor/ pectinesterase/ pectinesterase inhibitor C.G. S.X.
0.03 6e-2 38 Hordeum vulgare HF14D17r_at HF14D17r - - 3e-1 At3g02960 copper-binding protein-related C.G. S.X.
0.03 4e+0 34 Oryza sativa Os.6477.1.A1_at - - - 0 C.G. S.X.
0.02 8e+0 32 Triticum aestivum TaAffx.139321.1.S1_at CA650034 - - 9e-1 At3g22231 PCC1 (PATHOGEN AND CIRCADIAN CONTROLLED 1) C.G. S.X.
0.12 6e-4 44 Vitis vinifera 1619950_at CB003880 - - 6e-12 At1g14890 enzyme inhibitor/ pectinesterase/ pectinesterase inhibitor C.G. S.X.
0.02 8e-1 34 Zea mays Zm.19319.1.A1_at BI992453 hypothetical protein LOC100274532 - 7e+0 At5g64560 magnesium transporter CorA-like family protein (MRS2-2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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