Gene omics information

Query gene ID	PtpAffx.5801.2.S1_a_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	97.0	PtpAffx.5801.2.S1_a_at	CF230406	hypothetical protein	-	4e-22	At2g42680	MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A)	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	Ptp.3398.1.S1_at	DN485465	hypothetical protein	-	3e-24	At3g21610	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.5801.1.S1_s_at	CV261581	hypothetical protein	-	2e-30	At2g42680	MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A)	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.56332.1.A1_at	CV269092	hypothetical protein	-	9e-16	At4g10080	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.32	55.2	PtpAffx.26423.1.S1_a_at	CV239189	hypothetical protein	-	2e-24	At4g35230	BSK1 (BR-SIGNALING KINASE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.17912.1.A1_s_at	DN487070	hypothetical protein	-	9e-59	At1g72340	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.5	98.3	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.6	96.2	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.3	95.8	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.3	95.8	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.5	94.3	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.2	89.3	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.75	0	963	PtpAffx.5801.1.S1_x_at	CV261581	hypothetical protein	-	2e-30	At2g42680	MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A)	C.G.	S.X.	Please selecteFP Browser (expression)
0.75	0	963	PtpAffx.5801.1.S1_s_at	CV261581	hypothetical protein	-	2e-30	At2g42680	MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A)	C.G.	S.X.	Please selecteFP Browser (expression)
0.75	0	963	PtpAffx.5801.1.S1_at	CV261581	hypothetical protein	-	2e-30	At2g42680	MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A)	C.G.	S.X.	Please selecteFP Browser (expression)
0.59	5e-180	630	Ptp.6700.1.S1_at	CV256883	hypothetical protein	-	3e-8	At2g42680	MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	5e-4	46	PtpAffx.37260.1.S1_at	BI071931	hypothetical protein	-	1e-1	At2g42680	MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	8e-3	42	PtpAffx.152736.1.S1_at	CX169611	-	-	4e-1	At2g28500	LBD11 (LOB DOMAIN-CONTAINING PROTEIN 11)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	3e-2	40	Ptp.1717.1.A1_at	CV272748	hypothetical protein	-	9e-5	At5g53900	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e-1	38	PtpAffx.49382.3.S1_a_at	BU862003	hypothetical protein	-	3e-1	At5g07500	PEI1	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	5e-1	36	PtpAffx.95892.1.A1_at	CV228854	hypothetical protein	-	2e-2	At2g32840	proline-rich family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.46	4e-22	105	Arabidopsis thaliana	At2g42680	818868	MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A)	One of three genes in A. thaliana encoding multiprotein bridging factor 1, a highly conserved transcriptional coactivator. May serve as a bridging factor between a bZIP factor and TBP. Its expression is developmentally regulated.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.39	2e-43	176	Glycine max	Gma.10751.2.S1_at	AW153136	-	-	4e-13	At2g42680	MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A)	C.G.	S.X.	Please select
0.32	6e-23	107	Hordeum vulgare	Contig2948_at	Contig2948	-	-	2e-12	At3g58680	MBF1B (MULTIPROTEIN BRIDGING FACTOR 1B)	C.G.	S.X.	Please select
0.15	1e-27	125	Oryza sativa	Os08g0366100	AK120339.1	-	EDF-1 protein (HMBF1alpha) (Endothelialdifferentiation-related factor 1, isoform alpha)(Fragment)	6e-11	At2g42680	MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.21	1e-22	107	Triticum aestivum	Ta.1023.1.S1_at	CF134054	-	-	2e-13	At2g42680	MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A)	C.G.	S.X.	Please select
0.48	2e-71	268	Vitis vinifera	1616794_at	CF205534.1	-	-	3e-26	At3g58680	MBF1B (MULTIPROTEIN BRIDGING FACTOR 1B)	C.G.	S.X.	Please select
0.19	3e-21	101	Zea mays	Zm.13947.2.A1_at	AI737859	-	-	2e-13	At2g42680	MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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