CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.57928.2.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 97.0 PtpAffx.57928.2.S1_at BI120751 hypothetical protein - 1e+0 At3g52990 pyruvate kinase, putative S.X. H.G.
0.91 99.2 PtpAffx.82253.1.A1_at CV232973 hypothetical protein - 2e-20 At3g52990 pyruvate kinase, putative S.X. H.G.
0.73 93.6 PtpAffx.45836.1.A1_at CK092162 hypothetical protein - 1e-2 At5g51010 rubredoxin family protein S.X. H.G.
0.67 91.1 PtpAffx.13918.1.S1_at CV262227 hypothetical protein - 1e+0 At1g44750 ATPUP11 S.X. H.G.
0.43 69.7 Ptp.2607.2.S1_a_at BU894129 hypothetical protein - 1e+0 At2g03850 late embryogenesis abundant domain-containing protein / LEA domain-containing protein S.X. H.G.
0.40 67.0 PtpAffx.212292.1.S1_at pmrna24100 hypothetical protein - 2e+0 At4g34170 kelch repeat-containing F-box family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
36.8 100.0 GSM328562 Populus x canescens root hypoxia_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
20.6 99.8 GSM328532 Populus x canescens root hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.5 97.8 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.2 97.6 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.8 96.4 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.2 95.6 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.8 92.1 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.5 83.5 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.3 81.0 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.31 1e-154 545 PtpAffx.207584.1.S1_at pmrna15052 hypothetical protein - 3e-56 At2g36580 pyruvate kinase, putative C.G. S.X.
0.41 2e-144 511 PtpAffx.57928.1.S1_s_at CK319492 hypothetical protein - 1e-33 At2g36580 pyruvate kinase, putative C.G. S.X.
0.38 5e-37 155 PtpAffx.207586.1.S1_at pmrna15055 hypothetical protein - 3e-1 At1g51355 unknown protein C.G. S.X.
0.23 7e-18 91 Ptp.4195.1.S1_at BU881509 hypothetical protein - 2e-25 At3g52990 pyruvate kinase, putative C.G. S.X.
0.01 3e-1 36 PtpAffx.212325.1.S1_s_at pmrna24169 - - 4e-1 At4g21560 VPS28-1 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28 HOMOLOG 1) C.G. S.X.
0.04 1e+0 34 PtpAffx.85736.1.S1_at DN491290 hypothetical protein - 8e-25 At5g15310 ATMYB16 (MYB DOMAIN PROTEIN 16) C.G. S.X.
0.04 1e+0 34 PtpAffx.213530.1.S1_at pmrna26442 hypothetical protein - 2e-8 At3g52990 pyruvate kinase, putative C.G. S.X.
0.03 5e+0 32 PtpAffx.95213.1.A1_at CV256287 hypothetical protein - 1e-20 At3g06730 thioredoxin family protein C.G. S.X.
0.02 5e+0 32 PtpAffx.34653.1.S1_at DN500767 - - 2e+0 At4g25570 ACYB-2 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 1e+0 34 Arabidopsis thaliana At3g52990 824465 pyruvate kinase, putative F:pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity;P:response to cadmium ion, glycolysis;C:membrane;BOMPFA - - - C.G. S.X.
0.33 8e-36 151 Glycine max GmaAffx.92647.1.S1_s_at CF807455 - - 1e+0 At3g61763 unknown protein C.G. S.X.
0.05 5e-1 34 Hordeum vulgare HU13K14u_at HU13K14u - - 4e-2 At2g30530 unknown protein C.G. S.X.
0.02 8e+0 32 Oryza sativa OsAffx.4622.1.S1_at - - - 0 C.G. S.X.
0.04 3e-1 36 Triticum aestivum Ta.12068.1.S1_at BQ171514 - - 4e+0 At3g21700 SGP2 C.G. S.X.
0.04 7e-2 36 Vitis vinifera 1618125_at BQ798742 hypothetical protein LOC100261276 - 9e-23 At2g36580 pyruvate kinase, putative C.G. S.X.
0.03 3e+1 28 Zea mays ZmAffx.1040.1.A1_at AI881777 - - 3e+0 At1g49590 formin-binding protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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