CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.57734.1.S1_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 96.0 PtpAffx.57734.1.S1_at DN486150 - - 3e-1 At1g56200 emb1303 (embryo defective 1303) S.X. H.G.
0.67 91.1 Ptp.5017.1.S1_at CV276285 hypothetical protein - 1e-10 At3g18040 MPK9 (MAP KINASE 9) S.X. H.G.
0.46 73.7 PtpAffx.30445.2.S1_a_at CV275763 hypothetical protein - 2e-32 At3g18040 MPK9 (MAP KINASE 9) S.X. H.G.
0.40 67.0 PtpAffx.5622.2.S1_s_at CV241605 hypothetical protein - 2e-9 At2g22830 SQE2 (squalene epoxidase 2) S.X. H.G.
0.25 43.6 PtpAffx.55455.1.S1_a_at CV242141 beta-ketoacyl-coa synthase family protein /// beta-ketoacyl-coa synthase family protein - 4e-12 At1g04220 KCS2 (3-KETOACYL-COA SYNTHASE 2) S.X. H.G.
0.18 30.8 Ptp.5292.1.S1_s_at CV249488 hypothetical protein - 5e-1 At1g55330 AGP21 S.X. H.G.
0.16 26.9 PtpAffx.209398.1.S1_at pmrna18615 p-aminobenzoate synthase - 1e-25 At2g28880 emb1997 (embryo defective 1997) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.9 99.4 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
7.2 98.1 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.6 96.2 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.5 96.1 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.8 94.9 GSM328077 Populus x canescens leaf control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.4 94.0 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.4 94.0 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.4 94.0 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.3 93.7 GSM327397 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2 GSE13990 Populus balsamifera developmental tissue series
3.3 93.7 GSM327380 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.43 2e-49 196 PtpAffx.204395.1.S1_at pmrna8626 hypothetical protein - 1e-2 At3g52740 unknown protein C.G. S.X.
0.20 5e-13 75 PtpAffx.60213.1.S1_at DN500798 - - 2e-5 At3g44450 unknown protein C.G. S.X.
0.02 5e-1 36 PtpAffx.223413.1.S1_at pmrna41404 hypothetical protein - 8e+0 At5g28610 - C.G. S.X.
0.03 2e+0 34 PtpAffx.5853.1.A1_at CK091434 cc-nbs-lrr resistance protein - 9e-1 At2g28870 unknown protein C.G. S.X.
0.02 2e+0 34 PtpAffx.50562.3.A1_at BU878309 hypothetical protein - 4e-32 At5g52370 unknown protein C.G. S.X.
0.02 2e+0 34 PtpAffx.50562.2.A1_at CV264902 hypothetical protein - 1e-32 At5g52370 unknown protein C.G. S.X.
0.03 2e+0 34 PtpAffx.50562.1.A1_a_at CK097651 hypothetical protein - 2e-39 At5g52370 unknown protein C.G. S.X.
0.03 2e+0 34 PtpAffx.225864.1.S1_at pmrna45498 hypothetical protein - 1e+0 At4g16500 cysteine protease inhibitor family protein / cystatin family protein C.G. S.X.
0.01 2e+0 34 PtpAffx.200485.1.S1_at pmrna975 AP2 domain-containing transcription factor - 6e-54 At1g72570 DNA binding / transcription factor C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-1 36 Arabidopsis thaliana At1g56200 842073 emb1303 (embryo defective 1303) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:chloroplast;PMBO - - - C.G. S.X.
0.03 2e+0 34 Glycine max Gma.3154.2.S1_at CA784542 - - 2e-1 At3g46880 unknown protein C.G. S.X.
0.05 1e-2 40 Hordeum vulgare basd24a19_at basd24a19 - - 4e-1 At2g33255 catalytic/ hydrolase/ phosphoglycolate phosphatase C.G. S.X.
0.02 3e+0 34 Oryza sativa Os08g0256000 AK105511.1 - Conserved hypothetical protein 6e-1 At4g21830 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein C.G. S.X.
0.04 9e-2 38 Triticum aestivum Ta.12061.1.A1_at BQ171500 - - 3e+0 At5g24500 unknown protein C.G. S.X.
0.03 4e-1 34 Vitis vinifera 1622828_at CF209348 hypothetical protein LOC100261485 - 1e-3 At1g25280 AtTLP10 (TUBBY LIKE PROTEIN 10) C.G. S.X.
0.03 9e+0 30 Zea mays ZmAffx.1199.2.A1_at AI691435 - - 1e-8 At3g48610 phosphoesterase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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