CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.5765.1.A1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.78 95.1 PtpAffx.5765.1.A1_at CV244528 hypothetical protein - 2e-13 At1g55140 RNA binding / ribonuclease III S.X. H.G.
0.47 74.6 PtpAffx.56476.2.A1_a_at CV244264 - - 8e-12 At2g30695 - S.X. H.G.
0.23 40.5 PtpAffx.49520.1.A1_a_at CV282205 hypothetical protein - 1e-1 At2g01870 unknown protein S.X. H.G.
0.22 38.3 PtpAffx.25946.2.A1_at CV236894 hypothetical protein - 2e-15 At1g48450 unknown protein S.X. H.G.
0.15 25.3 Ptp.5057.1.S1_a_at CV244905 hypothetical protein - 7e-6 At4g02725 unknown protein S.X. H.G.
0.12 19.6 PtpAffx.222001.1.S1_at pmrna39186 hypothetical protein - 1e-12 At4g36810 GGPS1 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 1) S.X. H.G.
0.07 11.6 PtpAffx.29245.1.A1_at BP936612 hypothetical protein - 2e-8 At1g02910 LPA1 (LOW PSII ACCUMULATION1) S.X. H.G.
0.06 9.8 PtpAffx.204125.1.S1_at pmrna8136 hypothetical protein - 6e-7 At5g39210 CRR7 (CHLORORESPIRATORY REDUCTION 7) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
14.6 99.5 GSM372099 Clone3200_LPI5_N+_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
11.1 99.1 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
8.9 98.7 GSM372100 Clone3200_LPI5_N+_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.5 96.1 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.4 95.9 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.1 93.2 GSM327359 Populus balsamifera_20071015_Seedling_continuous_light_6d_3 GSE13990 Populus balsamifera developmental tissue series
2.6 91.3 GSM372092 Clone3200_LPI2_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6 91.3 GSM372094 Clone3200_LPI5_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2 89.3 GSM362887 Clone1979_LPI5_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1 88.6 GSM372093 Clone3200_LPI5_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.54 1e-94 347 PtpAffx.88983.3.A1_a_at CV243293 - - 1e+0 At3g13740 URF 4-related C.G. S.X.
0.11 6e-23 109 PtpAffx.88983.1.A1_a_at DN487791 - - 1e+0 At1g57830 Toll-Interleukin-Resistance (TIR) domain-containing protein C.G. S.X.
0.11 6e-23 109 PtpAffx.88983.1.A1_at DN487791 - - 1e+0 At1g57830 Toll-Interleukin-Resistance (TIR) domain-containing protein C.G. S.X.
0.01 5e-2 40 PtpAffx.200012.1.S1_at pmrna19 hypothetical protein - 5e-6 At4g26330 UNE17 (UNFERTILIZED EMBRYO SAC 17) C.G. S.X.
0.01 5e-2 40 PtpAffx.200012.1.S1_s_at pmrna19 hypothetical protein - 5e-6 At4g26330 UNE17 (UNFERTILIZED EMBRYO SAC 17) C.G. S.X.
0.03 2e-1 38 PtpAffx.138614.1.A1_at DN491057 - - 4e-15 At3g58140 phenylalanyl-tRNA synthetase class IIc family protein C.G. S.X.
0.02 7e-1 36 PtpAffx.210301.1.S1_at pmrna20265 GRAS family transcription factor LATERAL - 6e-4 At1g55580 LAS (Lateral Suppressor) C.G. S.X.
0.02 7e-1 36 PtpAffx.210301.1.S1_x_at pmrna20265 GRAS family transcription factor LATERAL - 6e-4 At1g55580 LAS (Lateral Suppressor) C.G. S.X.
0.01 3e+0 34 PtpAffx.7902.2.S1_at CX657522 hypothetical protein - 3e+0 At2g22121 LCR35 (Low-molecular-weight cysteine-rich 35) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 2e-13 77 Arabidopsis thaliana At1g55140 841957 RNA binding / ribonuclease III F:RNA binding, ribonuclease III activity;P:RNA processing;C:chloroplast;BOP - - - C.G. S.X.
0.02 7e-1 36 Glycine max Gma.6791.1.S1_s_at BE801043 - - 8e-1 At1g36942 unknown protein C.G. S.X.
0.03 4e-3 42 Hordeum vulgare Contig15646_at Contig15646 - - 6e-1 At5g18520 - C.G. S.X.
0.03 4e-3 44 Oryza sativa Os11g0237700 CB665960 - Uncharacterised conserved protein UCP005520 familyprotein 7e+0 At5g16453 - C.G. S.X.
0.03 9e-3 42 Triticum aestivum Ta.27727.1.S1_at CA618225 - - 6e-1 At5g18520 - C.G. S.X.
0.17 1e-20 99 Vitis vinifera 1613696_at CA817501 hypothetical protein LOC100242891 - 1e+0 At2g25720 unknown protein C.G. S.X.
0.02 6e-2 38 Zea mays Zm.17833.1.S1_at CK394754 hypothetical protein LOC100277612 - 2e+0 At3g13740 URF 4-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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