CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.57544.1.A1_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.65 88.6 PtpAffx.57544.1.A1_at CV266909 - - 3e-1 At3g07920 translation initiation factor S.X. H.G.
0.86 97.4 PtpAffx.200248.1.S1_at pmrna481 hypothetical protein - 3e-7 At3g43740 leucine-rich repeat family protein S.X. H.G.
0.71 92.6 PtpAffx.204828.1.S1_at pmrna9522 - - 2e-1 At4g15393 CYP702A5 S.X. H.G.
0.69 91.5 Ptp.3568.1.S1_at DN493064 hypothetical protein - 8e-16 At4g24290 - S.X. H.G.
0.67 91.1 PtpAffx.225157.1.S1_at pmrna44294 hypothetical protein - 1e-13 At1g14550 anionic peroxidase, putative S.X. H.G.
0.63 88.1 PtpAffx.32930.1.A1_at CK095139 hypothetical protein - 2e-1 At1g14185 glucose-methanol-choline (GMC) oxidoreductase family protein S.X. H.G.
0.61 87.0 PtpAffx.765.1.A1_at CV276457 hypothetical protein - 3e-16 At3g04520 THA2 (Threonine Aldolase 2) S.X. H.G.
0.55 82.2 PtpAffx.44290.1.A1_at CV238019 hypothetical protein - 3e-1 At2g29340 short-chain dehydrogenase/reductase (SDR) family protein S.X. H.G.
0.50 78.6 PtpAffx.130922.1.S1_s_at AJ773860 - - 5e-6 At1g66950 PDR11 (PLEIOTROPIC DRUG RESISTANCE 11) S.X. H.G.
0.44 71.9 PtpAffx.211742.1.S1_at pmrna23011 hypothetical protein - 2e-4 At4g16120 COBL7 (COBRA-LIKE 7) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
22.6 99.8 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
18.6 99.7 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.7 97.3 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.6 96.2 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.1 95.5 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.1 95.5 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.8 94.9 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.6 94.5 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.2 93.5 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.28 8e-49 194 PtpAffx.225364.1.S1_at pmrna44669 hypothetical protein - 1e+0 At1g60640 unknown protein C.G. S.X.
0.38 7e-40 165 PtpAffx.220112.1.S1_s_at pmrna36444 hypothetical protein - 6e-1 At1g60640 unknown protein C.G. S.X.
0.02 2e+0 34 PtpAffx.25202.1.A1_at CV229061 hypothetical protein - 8e-43 At5g47640 NF-YB2 (NUCLEAR FACTOR Y, SUBUNIT B2) C.G. S.X.
0.01 2e+0 34 PtpAffx.203833.1.S1_at pmrna7572 hypothetical protein - 3e-4 At1g29170 WAVE2 C.G. S.X.
0.02 7e+0 32 PtpAffx.9188.1.A1_at CK094879 - - 6e-12 At4g19450 nodulin-related C.G. S.X.
0.03 7e+0 32 PtpAffx.89046.1.A1_at CV240945 - - 5e-21 At3g52590 UBQ1 (UBIQUITIN EXTENSION PROTEIN 1) C.G. S.X.
0.04 7e+0 32 PtpAffx.56479.1.A1_at CV263471 hypothetical protein - 5e-1 At4g36040 DNAJ heat shock N-terminal domain-containing protein (J11) C.G. S.X.
0.02 7e+0 32 PtpAffx.221936.1.S1_at pmrna39055 hypothetical protein - 2e+0 At1g70470 unknown protein C.G. S.X.
0.01 7e+0 32 PtpAffx.219767.1.S1_at pmrna35828 white-brown-complex ABC transporter family - 7e-46 At2g37010 ATNAP12 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-1 36 Arabidopsis thaliana At3g07920 819983 translation initiation factor F:translation initiation factor activity;P:translational initiation;C:cellular_component unknown;MOAFPV - - - C.G. S.X.
0.04 2e+0 34 Glycine max GmaAffx.71331.1.S1_at AW597101 - - 6e-5 At1g53290 galactosyltransferase family protein C.G. S.X.
0.04 3e+0 32 Hordeum vulgare Contig15453_s_at Contig15453 - - 7e+0 Atcg00050 - C.G. S.X.
0.03 1e+1 32 Oryza sativa OsAffx.5138.1.S1_at - - - 0 C.G. S.X.
0.04 3e-1 36 Triticum aestivum Ta.15848.1.S1_at CA498563 - - 2e+0 At3g42790 AL3 (ALFIN-LIKE 3) C.G. S.X.
0.04 4e-1 34 Vitis vinifera 1622702_x_at CF204380.1 - - 7e+0 At5g48580 FKBP15-2 C.G. S.X.
0.04 2e+0 32 Zea mays ZmAffx.1127.1.S1_at AW324638 - - 2e-1 At1g27380 RIC2 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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