CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.57531.1.A1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 92.6 PtpAffx.57531.1.A1_at CV264188 hypothetical protein - 5e-31 At2g16700 ADF5 (ACTIN DEPOLYMERIZING FACTOR 5) S.X. H.G.
0.83 97.0 PtpAffx.207601.1.S1_at pmrna15082 hypothetical protein - 4e-5 At1g67750 pectate lyase family protein S.X. H.G.
0.50 78.6 PtpAffx.155765.1.S1_s_at CF229016 hypothetical protein - 6e+0 At3g49930 zinc finger (C2H2 type) family protein S.X. H.G.
0.50 78.6 PtpAffx.61301.1.A1_at DN485997 hypothetical protein - 7e-1 At1g54120 unknown protein S.X. H.G.
0.44 71.9 PtpAffx.249.511.S1_x_at CF236558 - - 2e-2 At4g17480 palmitoyl protein thioesterase family protein S.X. H.G.
0.36 61.6 PtpAffx.6492.2.A1_s_at CF227318 hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase - 4e-14 At5g48930 HCT (HYDROXYCINNAMOYL-COA SHIKIMATE/QUINATE HYDROXYCINNAMOYL TRANSFERASE) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
28.9 99.9 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
26.0 99.9 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
15.3 99.5 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.8 86.4 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.4 82.3 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.3 81.0 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.3 81.0 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.2 79.6 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.2 79.6 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.72 0 646 Ptp.3758.1.S1_at CV251606 hypothetical protein - 2e-11 At2g16700 ADF5 (ACTIN DEPOLYMERIZING FACTOR 5) C.G. S.X.
0.43 3e-141 502 Ptp.437.1.S1_at CK089108 hypothetical protein - 2e-2 At2g16700 ADF5 (ACTIN DEPOLYMERIZING FACTOR 5) C.G. S.X.
0.12 2e-9 63 PtpAffx.56667.1.S1_at CV255505 hypothetical protein - 2e-31 At2g31200 ADF6 (ACTIN DEPOLYMERIZING FACTOR 6) C.G. S.X.
0.04 5e-7 56 Ptp.7.1.S1_at CV280655 hypothetical protein - 3e-33 At2g31200 ADF6 (ACTIN DEPOLYMERIZING FACTOR 6) C.G. S.X.
0.12 2e-3 44 PtpAffx.203236.1.S1_at pmrna6410 actin depolymerizing factor 3 - 6e-17 At1g01750 ADF11 (ACTIN DEPOLYMERIZING FACTOR 11) C.G. S.X.
0.07 8e-3 42 Ptp.1543.1.S1_at CK089216 actin depolymerizing factor 6 - 2e-30 At3g46010 ADF1 (ACTIN DEPOLYMERIZING FACTOR 1) C.G. S.X.
0.04 3e-2 40 PtpAffx.56064.1.A1_at CV280271 - - 6e-6 At2g31200 ADF6 (ACTIN DEPOLYMERIZING FACTOR 6) C.G. S.X.
0.04 3e-2 40 PtpAffx.153847.1.A1_at CV240191 hypothetical protein - 4e-35 At4g25590 ADF7 (actin depolymerizing factor 7) C.G. S.X.
0.07 3e-2 40 Ptp.1543.2.S1_s_at CV247313 actin depolymerizing factor 5 - 5e-26 At3g46010 ADF1 (ACTIN DEPOLYMERIZING FACTOR 1) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.47 5e-31 135 Arabidopsis thaliana At2g16700 816171 ADF5 (ACTIN DEPOLYMERIZING FACTOR 5) Encodes actin depolymerizing factor 5 (ADF5). - - - C.G. S.X.
0.34 3e-64 246 Glycine max Gma.597.1.S1_s_at AI443313 - - 2e-24 At2g16700 ADF5 (ACTIN DEPOLYMERIZING FACTOR 5) C.G. S.X.
0.07 5e-5 48 Hordeum vulgare Contig5010_at Contig5010 - - 3e-20 At5g59890 ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) C.G. S.X.
0.06 2e-1 38 Oryza sativa Os.2813.1.S1_at - - - 0 C.G. S.X.
0.06 4e-7 56 Triticum aestivum Ta.8646.1.S1_at BQ162165 - - 6e-25 At4g25590 ADF7 (actin depolymerizing factor 7) C.G. S.X.
0.12 7e-9 59 Vitis vinifera 1607336_at BQ800260 hypothetical protein LOC100242532 - 9e-15 At2g31200 ADF6 (ACTIN DEPOLYMERIZING FACTOR 6) C.G. S.X.
0.06 7e-10 63 Zea mays Zm.15444.1.S1_at CK347287 actin-depolymerizing factor - 6e-25 At4g25590 ADF7 (actin depolymerizing factor 7) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage