Gene omics information

Query gene ID	PtpAffx.5746.4.S1_s_at
Gene name
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.82	96.3	PtpAffx.5746.4.S1_s_at	CV225347	-	-	9e-10	At3g02180	SP1L3 (SPIRAL 1-LIKE3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.37	62.3	Ptp.4315.1.S1_at	CK087345	hypothetical protein	-	1e-8	At2g22260	oxidoreductase, 2OG-Fe(II) oxygenase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.31	53.7	Ptp.7815.1.A1_at	CX185861	hypothetical protein	-	1e-1	At2g19360	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.31	53.7	Ptp.6740.1.S1_x_at	CV277438	hypothetical protein	-	6e-22	At5g64400	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.30	52.0	Ptp.7760.1.S1_at	DN499495	hypothetical protein	-	5e+0	At5g20160	ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.30	52.0	Ptp.1591.1.S1_s_at	CV267457	hypothetical protein	-	3e-24	At3g51260	PAD1 (20s proteasome alpha subunit pad1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	Ptp.7094.1.S1_at	CV226959	hypothetical protein	-	8e-6	At2g34690	ACD11 (ACCELERATED CELL DEATH 11)	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	Ptp.2400.1.S1_at	CK092844	hypothetical protein	-	3e-10	At2g04660	APC2	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	Ptp.3677.1.S1_s_at	CV255022	hypothetical protein	-	0	Atcg00900	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.26	45.2	PtpAffx.156973.1.S1_at	CK091178	hypothetical protein	-	1e-60	At2g02470	AL6 (ALFIN-LIKE 6)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.5	98.3	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.4	95.9	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.6	94.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.55	2e-119	428	PtpAffx.5746.2.S1_x_at	CV237077	-	-	7e-3	At5g15600	SP1L4 (SPIRAL1-LIKE4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.46	4e-56	218	PtpAffx.5746.3.S1_s_at	CX657381	hypothetical protein	-	5e-3	At3g02180	SP1L3 (SPIRAL 1-LIKE3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.11	5e-9	61	PtpAffx.10834.1.A1_at	CV232277	hypothetical protein	-	2e-20	At5g15600	SP1L4 (SPIRAL1-LIKE4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.11	5e-9	61	Ptp.4305.1.S1_at	CF228631	hypothetical protein	-	4e-4	At1g69230	SP1L2 (SPIRAL1-LIKE2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.11	5e-9	61	Ptp.4305.1.S1_s_at	CF228631	hypothetical protein	-	4e-4	At1g69230	SP1L2 (SPIRAL1-LIKE2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.10	7e-5	48	PtpAffx.39613.1.S1_s_at	CV227967	hypothetical protein	-	4e-13	At1g69230	SP1L2 (SPIRAL1-LIKE2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	3e-4	46	Ptp.3879.1.S1_at	DN483623	hypothetical protein	-	1e-7	At1g26355	SP1L1 (SPIRAL1-LIKE1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.08	3e-4	46	Ptp.1892.1.S1_x_at	CV282266	hypothetical protein	-	5e-13	At1g69230	SP1L2 (SPIRAL1-LIKE2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	1e-3	44	PtpAffx.39613.2.S1_at	CV228727	hypothetical protein	-	4e-4	At3g02180	SP1L3 (SPIRAL 1-LIKE3)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.15	9e-10	63	Arabidopsis thaliana	At3g02180	821277	SP1L3 (SPIRAL 1-LIKE3)	SPIRAL1-LIKE3 belongs to a six-member gene family in Arabidopsis; all members share high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root, leaf and petal growth as a result of defective anisotropic cell expansion.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	5e-3	42	Glycine max	GmaAffx.1301.88.S1_s_at	BG041563	-	-	4e-12	At5g15600	SP1L4 (SPIRAL1-LIKE4)	C.G.	S.X.	Please select
0.09	2e-3	42	Hordeum vulgare	Contig2362_s_at	Contig2362	-	-	6e-15	At1g26355	SP1L1 (SPIRAL1-LIKE1)	C.G.	S.X.	Please select
0.09	3e-2	40	Oryza sativa	Os03g0417800	AK121654.1	-	Nitrilase associated protein-like	1e-4	At1g26355	SP1L1 (SPIRAL1-LIKE1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	5e-2	38	Triticum aestivum	Ta.26556.1.A1_at	CD491200	-	-	2e-5	At2g03680	SPR1 (SPIRAL1)	C.G.	S.X.	Please select
0.14	7e-11	65	Vitis vinifera	1618440_s_at	CD801284	hypothetical protein LOC100256565	-	2e-2	At5g15600	SP1L4 (SPIRAL1-LIKE4)	C.G.	S.X.	Please select
0.16	2e-6	52	Zea mays	Zm.6984.5.S1_a_at	AI770726	hypothetical protein LOC100193571	-	5e-8	At2g03680	SPR1 (SPIRAL1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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