CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.57191.1.A1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 94.9 PtpAffx.57191.1.A1_at CV276610 hypothetical protein - 8e+0 At5g25020 unknown protein S.X. H.G.
0.57 84.2 PtpAffx.4886.1.S1_a_at CV263548 hypothetical protein - 1e-6 At2g38780 unknown protein S.X. H.G.
0.53 80.5 Ptp.2223.1.S1_at CK089386 hypothetical protein - 1e+0 At1g18130 tRNA synthetase-related / tRNA ligase-related S.X. H.G.
0.47 74.6 PtpAffx.113940.1.A1_at CV277947 hypothetical protein - 7e-6 At5g11330 monooxygenase family protein S.X. H.G.
0.42 68.6 PtpAffx.223274.1.S1_s_at pmrna41189 hypothetical protein - 3e-46 At2g23390 - S.X. H.G.
0.33 57.5 Ptp.3154.1.S1_at DN485746 hypothetical protein - 2e-78 At1g79600 ABC1 family protein S.X. H.G.
0.30 52.0 PtpAffx.52156.2.A1_a_at CV270967 - - 6e-8 At5g03900 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.9 98.0 GSM372097 Clone3200_LPI5_N-_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
6.5 97.8 GSM372042 Clone1979_LPI5_N-_8w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.4 97.0 GSM372098 Clone3200_LPI5_N-_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.5 96.1 GSM372043 Clone1979_LPI5_N-_8w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.8 94.9 GSM372100 Clone3200_LPI5_N+_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.7 94.7 GSM372099 Clone3200_LPI5_N+_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.6 94.5 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.2 93.5 GSM372045 Clone1979_LPI5_N+_8w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6 91.3 GSM244441 Mixed infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.5 90.9 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.34 6e-66 252 PtpAffx.220202.1.S1_at pmrna36559 hypothetical protein - 3e+0 At1g79040 PSBR (photosystem II subunit R) C.G. S.X.
0.12 3e-40 167 PtpAffx.57191.2.A1_at CV240424 hypothetical protein - 1e+0 At2g03370 transferase, transferring glycosyl groups C.G. S.X.
0.03 3e-3 44 Ptp.1672.2.A1_at CV255452 hypothetical protein - 5e-34 At4g33410 signal peptide peptidase family protein C.G. S.X.
0.02 2e-1 38 PtpAffx.67985.2.S1_a_at BP924834 hypothetical protein - 2e+0 At5g62440 - C.G. S.X.
0.02 2e-1 38 PtpAffx.67985.2.S1_at BP924834 hypothetical protein - 2e+0 At5g62440 - C.G. S.X.
0.01 2e-1 38 PtpAffx.222247.1.S1_at pmrna39534 hypothetical protein - 1e-85 At2g43360 BIO2 (BIOTIN AUXOTROPH 2) C.G. S.X.
0.02 2e-1 38 Ptp.4285.1.S1_at DN499481 - - 2e-17 At2g43360 BIO2 (BIOTIN AUXOTROPH 2) C.G. S.X.
0.01 3e+0 34 PtpAffx.82882.1.A1_at CV228723 - - 2e+0 At3g61100 unknown protein C.G. S.X.
0.03 3e+0 34 PtpAffx.76069.1.A1_at CV245194 hypothetical protein - 3e+0 At5g49600 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 8e+0 32 Arabidopsis thaliana At5g25020 832572 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM - - - C.G. S.X.
0.06 5e-8 59 Glycine max Gma.6955.1.A1_at BU546203 - - 1e+0 At5g55650 unknown protein C.G. S.X.
0.03 4e+0 32 Hordeum vulgare HU13N19u_at HU13N19u - - 4e+0 At5g35195 - C.G. S.X.
0.03 4e+0 34 Oryza sativa Os05g0337500 CB640460 - Conserved hypothetical protein 3e-1 At1g63310 - C.G. S.X.
0.03 8e+0 32 Triticum aestivum Ta.25393.1.S1_at CD454210 - - 1e+0 At5g39365 - C.G. S.X.
0.25 2e-28 125 Vitis vinifera 1615381_at CB918250 - - 1e-1 At1g51650 ATP synthase epsilon chain, mitochondrial C.G. S.X.
0.02 3e+0 32 Zea mays Zm.8596.1.S1_a_at CF040636 hypothetical protein LOC100277152 - 4e-4 At5g16060 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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