CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.57186.1.A1_a_at

Gene name hypothetical protein /// gdp-mannose 4,6-dehydratase

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.57186.1.A1_a_at CV233728 hypothetical protein /// gdp-mannose 4,6-dehydratase - 8e-49 At3g51160 MUR1 (MURUS 1) S.X. H.G.
0.67 91.1 Ptp.7279.1.A1_at CV248221 vitamin-b12 independent methionine synthase, 5-methyltetrahydropteroyltriglutamate-homocysteine - 1e-178 At5g17920 ATMS1 S.X. H.G.
0.67 91.1 PtpAffx.1025.2.A1_x_at CV228295 vitamin-b12 independent methionine synthase, 5-methyltetrahydropteroyltriglutamate-homocysteine - 1e-153 At5g17920 ATMS1 S.X. H.G.
0.59 84.9 PtpAffx.3761.1.A1_x_at M73430.1 - - 4e-120 At1g02500 SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1) S.X. H.G.
0.36 61.6 Ptp.4952.1.S1_at CV228949 hypothetical protein - 4e-89 At1g59900 AT-E1 ALPHA S.X. H.G.
0.15 25.3 PtpAffx.249.708.A1_s_at CV258093 hypothetical protein - 1e+1 Atcg00380 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.9 98.0 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
6.8 98.0 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.4 95.9 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.3 95.8 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.2 95.6 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.6 94.5 GSM327402 Populus balsamifera_20071015_Etiolated_seedling_6d_2 GSE13990 Populus balsamifera developmental tissue series
3.4 94.0 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.1 93.2 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.8 92.1 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.6 91.3 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.97 0 1526 PtpAffx.57186.1.A1_at CV233728 hypothetical protein - 8e-49 At3g51160 MUR1 (MURUS 1) C.G. S.X.
0.53 0 634 PtpAffx.57186.2.A1_at CV233514 gdp-mannose 4,6-dehydratase - 9e-36 At3g51160 MUR1 (MURUS 1) C.G. S.X.
0.32 9e-74 278 PtpAffx.135595.1.S1_at CK111961 gdp-mannose 4,6-dehydratase - 5e-19 At3g51160 MUR1 (MURUS 1) C.G. S.X.
0.16 2e-65 250 Ptp.4678.1.S1_at BU877941 hypothetical protein - 7e-27 At3g51160 MUR1 (MURUS 1) C.G. S.X.
0.02 6e-1 36 PtpAffx.18595.1.S1_at BU868736 - - 2e-19 At2g39020 GCN5-related N-acetyltransferase (GNAT) family protein C.G. S.X.
0.02 6e-1 36 PtpAffx.18595.1.S1_a_at BU868736 - - 2e-19 At2g39020 GCN5-related N-acetyltransferase (GNAT) family protein C.G. S.X.
0.01 2e+0 34 PtpAffx.3969.1.S1_s_at CV271229 hypothetical protein - 1e-128 At3g07890 RabGAP/TBC domain-containing protein C.G. S.X.
0.03 2e+0 34 PtpAffx.222242.1.S1_at pmrna39528 hypothetical protein - 8e-1 At4g13850 GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2) C.G. S.X.
0.03 2e+0 34 PtpAffx.220876.1.S1_at pmrna37333 hypothetical protein - 3e-2 At3g49115 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.32 8e-49 194 Arabidopsis thaliana At3g51160 824280 MUR1 (MURUS 1) Catalyzes the first step in the de novo synthesis of GDP-L-fucose. - - - C.G. S.X.
0.33 3e-33 143 Glycine max Gma.5787.1.S1_at BQ298856 - - 1e-47 At5g66280 GMD1 (GDP-D-MANNOSE 4,6-DEHYDRATASE 1) C.G. S.X.
0.17 2e-10 65 Hordeum vulgare Contig631_at Contig631 - - 2e-19 At5g66280 GMD1 (GDP-D-MANNOSE 4,6-DEHYDRATASE 1) C.G. S.X.
0.03 2e-1 38 Oryza sativa Os11g0123201 9639.m00208 - - 3e-1 At5g62770 unknown protein C.G. S.X.
0.08 1e-1 38 Triticum aestivum Ta.28686.1.S1_at BJ307988 - - 2e-16 At5g66280 GMD1 (GDP-D-MANNOSE 4,6-DEHYDRATASE 1) C.G. S.X.
0.40 1e-81 301 Vitis vinifera 1613025_at CF403382 hypothetical protein LOC100264358 - 1e-25 At3g51160 MUR1 (MURUS 1) C.G. S.X.
0.12 5e-8 57 Zea mays Zm.502.1.S1_at CD484967 GDP-mannose 4,6 dehydratase 2 - 5e-14 At5g66280 GMD1 (GDP-D-MANNOSE 4,6-DEHYDRATASE 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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