CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.57073.1.A1_s_at

Gene name thioredoxin m

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.56 83.9 PtpAffx.57073.1.A1_s_at CV279168 thioredoxin m - 5e-7 At3g15360 TRX-M4 (ARABIDOPSIS THIOREDOXIN M-TYPE 4) S.X. H.G.
0.73 93.6 Ptp.5165.1.A1_s_at BP930275 - - 2e-15 At2g39730 RCA (RUBISCO ACTIVASE) S.X. H.G.
0.63 88.1 Ptp.5240.1.S1_s_at CX174264 hypothetical protein - 9e-14 At1g03130 PSAD-2 (photosystem I subunit D-2) S.X. H.G.
0.63 88.1 PtpAffx.4650.2.A1_at CV282694 hypothetical protein - 2e-44 At4g01150 unknown protein S.X. H.G.
0.58 84.2 PtpAffx.249.25.A1_s_at CV283699 hypothetical protein - 2e-7 At2g47400 CP12-1 S.X. H.G.
0.58 84.2 PtpAffx.148341.1.S1_s_at CN523541 light-harvesting complex II protein Lhcb5 - 2e-17 At4g10340 LHCB5 (LIGHT HARVESTING COMPLEX OF PHOTOSYSTEM II 5) S.X. H.G.
0.55 82.2 Ptp.5386.1.S1_s_at CX172919 hypothetical protein - 2e-12 At3g48570 protein transport protein SEC61 gamma subunit, putative S.X. H.G.
0.53 80.5 PtpAffx.249.164.A1_s_at CV276899 hypothetical protein - 2e-33 At1g06680 PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1) S.X. H.G.
0.50 78.6 PtpAffx.5813.1.S1_at CN524494 hypothetical protein - 8e-21 At3g27850 RPL12-C (ribosomal protein l12-c) S.X. H.G.
0.50 78.6 Ptp.5918.2.S1_a_at CV277094 hypothetical protein - 6e-34 At1g06680 PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.4 97.0 GSM362887 Clone1979_LPI5_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.1 96.8 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.1 95.5 GSM362890 Clone1979_LPI5_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.1 95.5 GSM362889 Clone1979_LPI5_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.0 95.3 GSM372093 Clone3200_LPI5_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.6 94.5 GSM372094 Clone3200_LPI5_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.4 94.0 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.3 93.7 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.2 93.5 GSM372100 Clone3200_LPI5_N+_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.26 5e-20 99 PtpAffx.37920.1.A1_at CV270540 thioredoxin m - 2e-3 At3g15360 TRX-M4 (ARABIDOPSIS THIOREDOXIN M-TYPE 4) C.G. S.X.
0.19 5e-17 89 PtpAffx.37920.2.A1_at CV284037 thioredoxin m - 3e-2 At3g56420 - C.G. S.X.
0.19 5e-17 89 PtpAffx.37920.2.A1_s_at CV284037 thioredoxin m - 3e-2 At3g56420 - C.G. S.X.
0.11 1e-8 61 Ptp.5290.1.S1_at BI072113 - - 7e-6 At3g15360 TRX-M4 (ARABIDOPSIS THIOREDOXIN M-TYPE 4) C.G. S.X.
0.07 7e-4 46 Ptp.4500.1.S1_at CV226875 thioredoxin m - 1e-7 At3g15360 TRX-M4 (ARABIDOPSIS THIOREDOXIN M-TYPE 4) C.G. S.X.
0.03 2e-1 38 PtpAffx.277.2.S1_at DN496281 hypothetical protein - 9e-1 At1g19730 ATTRX4 C.G. S.X.
0.02 7e-1 36 PtpAffx.9846.1.S1_at DN496715 - - 1e+0 At1g03680 ATHM1 C.G. S.X.
0.02 7e-1 36 PtpAffx.36037.1.S1_at CV264224 thioredoxin m - 2e+0 At1g32690 unknown protein C.G. S.X.
0.02 7e-1 36 PtpAffx.152131.1.S1_at BU898130 hypothetical protein - 1e-3 At4g36000 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 5e-7 56 Arabidopsis thaliana At3g15360 820775 TRX-M4 (ARABIDOPSIS THIOREDOXIN M-TYPE 4) encodes a prokaryotic thioredoxin - - - C.G. S.X.
0.11 4e-2 40 Glycine max Gma.2299.1.S1_at CD395410 - - 5e-4 At4g03520 ATHM2 C.G. S.X.
0.03 6e-2 38 Hordeum vulgare Contig9163_at Contig9163 - - 2e-6 At1g03680 ATHM1 C.G. S.X.
0.04 6e-2 40 Oryza sativa OsAffx.21483.3.A1_at - - - 0 C.G. S.X.
0.07 3e-2 40 Triticum aestivum Ta.136.1.S1_at CA625700 thioredoxin M - 1e-1 At2g47350 PAPA-1-like family protein / zinc finger (HIT type) family protein C.G. S.X.
0.25 4e-11 67 Vitis vinifera 1615926_at CA816891 hypothetical protein LOC100264263 - 4e-7 At3g15360 TRX-M4 (ARABIDOPSIS THIOREDOXIN M-TYPE 4) C.G. S.X.
0.02 5e-2 38 Zea mays Zm.8268.1.S1_at CK826607 thioredoxin M-type - 1e-1 At5g39950 ATTRX2 (THIOREDOXIN 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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