Gene omics information

Query gene ID	PtpAffx.56737.2.A1_a_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.2	PtpAffx.56737.2.A1_a_at	CX174790	hypothetical protein	-	3e-41	At4g33260	CDC20.2	S.X.	H.G.	Please selecteFP Browser (expression)
0.73	93.6	PtpAffx.129961.1.S1_at	CV226698	hypothetical protein	-	8e-34	At3g25980	mitotic spindle checkpoint protein, putative (MAD2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.127433.1.A1_at	CV257930	cyclin b	-	5e-3	At3g11520	CYCB1	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.18355.1.S1_at	CV253470	hypothetical protein	-	2e-1	At3g11520	CYCB1	S.X.	H.G.	Please selecteFP Browser (expression)
0.46	73.7	Ptp.5646.1.S1_s_at	CX169047	hypothetical protein	-	4e-7	At3g02640	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	Ptp.6641.1.S1_s_at	CV253874	hypothetical protein	-	1e-7	At2g25060	plastocyanin-like domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.2	98.1	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
6.8	98.0	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.2	97.6	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.0	95.3	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.6	94.5	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.6	94.5	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.6	94.5	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.4	94.0	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1336	PtpAffx.56737.2.A1_at	CX174790	hypothetical protein	-	3e-41	At4g33260	CDC20.2	C.G.	S.X.	Please selecteFP Browser (expression)
0.46	8e-83	307	Ptp.7389.2.A1_at	DN489860	hypothetical protein	-	2e-4	At4g33270	CDC20.1	C.G.	S.X.	Please selecteFP Browser (expression)
0.27	8e-46	184	PtpAffx.56737.1.A1_at	CV254159	hypothetical protein	-	2e-9	At4g33270	CDC20.1	C.G.	S.X.	Please selecteFP Browser (expression)
0.14	6e-16	85	Ptp.7808.1.S1_at	DN489590	-	-	4e-4	At4g33270	CDC20.1	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e+0	34	PtpAffx.222005.1.S1_s_at	pmrna39194	hypothetical protein	-	1e+0	At2g04425	LCR82 (Low-molecular-weight cysteine-rich 82)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e+0	34	PtpAffx.221669.1.S1_s_at	pmrna38669	hypothetical protein	-	2e+0	At3g27831	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.217775.1.S1_at	pmrna33172	hypothetical protein	-	8e-6	At5g58160	actin binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.217775.1.S1_a_at	pmrna33172	hypothetical protein	-	8e-6	At5g58160	actin binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.214319.1.S1_at	pmrna27849	hypothetical protein	-	3e-15	At5g19610	sec7 domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.32	3e-41	169	Arabidopsis thaliana	At4g33260	829462	CDC20.2	putative cdc20 protein (CDC20.2)	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.61	4e-63	242	Glycine max	GmaAffx.79146.1.S1_at	CA782170	-	-	9e-44	At4g33260	CDC20.2	C.G.	S.X.	Please select
0.25	7e-10	63	Hordeum vulgare	Contig19055_at	Contig19055	-	-	5e-16	At4g33270	CDC20.1	C.G.	S.X.	Please select
0.12	8e-22	105	Oryza sativa	Os04g0599800	AK103675.1	-	WD-repeat protein-like protein	2e-14	At4g33260	CDC20.2	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e+0	34	Triticum aestivum	TaAffx.119555.1.S1_at	BJ268323	-	-	3e-1	At4g27310	zinc finger (B-box type) family protein	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1619087_s_at	BQ796971	hypothetical protein LOC100264699	-	3e-10	At5g51020	CRL (CRUMPLED LEAF)	C.G.	S.X.	Please select
0.23	7e-22	103	Zea mays	Zm.6789.1.A1_at	CA827338	cell division cycle protein 20	-	6e-9	At4g33260	CDC20.2	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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