CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.5585.2.A1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 92.6 PtpAffx.5585.2.A1_at CV260093 hypothetical protein - 5e-7 At4g27700 rhodanese-like domain-containing protein S.X. H.G.
0.83 97.0 PtpAffx.224403.1.S1_at pmrna42899 hypothetical protein - 7e-80 Atcg01300 - S.X. H.G.
0.67 91.1 PtpAffx.249.460.S1_at AJ773062 hypothetical protein - 2e-11 At1g67090 RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A) S.X. H.G.
0.67 91.1 PtpAffx.210506.1.S1_x_at pmrna20610 hypothetical protein - 1e-43 At1g74470 geranylgeranyl reductase S.X. H.G.
0.60 86.0 PtpAffx.30291.1.A1_at CV283979 - - 2e-5 At1g79040 PSBR (photosystem II subunit R) S.X. H.G.
0.40 67.0 PtpAffx.210506.1.S1_at pmrna20610 hypothetical protein - 1e-43 At1g74470 geranylgeranyl reductase S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
43.2 100.0 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
9.8 98.9 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
6.4 97.7 GSM334226 Populus balsamifera_1006_mature_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
5.2 96.8 GSM372044 Clone1979_LPI5_N+_8w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.1 95.5 GSM372045 Clone1979_LPI5_N+_8w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.0 92.9 GSM372100 Clone3200_LPI5_N+_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.7 91.8 GSM362887 Clone1979_LPI5_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5 90.9 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3 89.8 GSM362884 Clone1979_LPI2_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1 88.6 GSM362889 Clone1979_LPI5_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.48 4e-113 408 PtpAffx.5585.1.S1_at CV280308 hypothetical protein - 3e-24 At4g27700 rhodanese-like domain-containing protein C.G. S.X.
0.48 4e-113 408 PtpAffx.5585.1.S1_a_at CV280308 hypothetical protein - 3e-24 At4g27700 rhodanese-like domain-containing protein C.G. S.X.
0.09 4e-2 40 PtpAffx.116760.1.A1_at CK089500 - - 9e+0 At3g49920 VDAC5 (VOLTAGE DEPENDENT ANION CHANNEL 5) C.G. S.X.
0.03 2e-1 38 PtpAffx.32868.1.A1_at CK096880 hypothetical protein - 2e-9 At1g32120 unknown protein C.G. S.X.
0.02 6e-1 36 PtpAffx.224785.1.S1_at pmrna43634 hypothetical protein - 4e-1 At2g32800 AP4.3A C.G. S.X.
0.01 6e-1 36 PtpAffx.224786.1.S1_at pmrna43635 hypothetical protein - 3e-5 At5g39390 leucine-rich repeat family protein / protein kinase family protein C.G. S.X.
0.03 6e-1 36 PtpAffx.222670.1.S1_x_at pmrna40223 hypothetical protein - 7e-1 At1g14370 APK2A (PROTEIN KINASE 2A) C.G. S.X.
0.03 6e-1 36 PtpAffx.222670.1.S1_at pmrna40223 hypothetical protein - 7e-1 At1g14370 APK2A (PROTEIN KINASE 2A) C.G. S.X.
0.03 6e-1 36 PtpAffx.122315.1.S1_at BU896709 hypothetical protein - 4e+0 At5g01075 beta-galactosidase C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.24 5e-7 56 Arabidopsis thaliana At4g27700 828884 rhodanese-like domain-containing protein F:molecular_function unknown;P:aging;C:chloroplast thylakoid membrane, chloroplast;BPOA - - - C.G. S.X.
0.29 7e-50 198 Glycine max Gma.2446.1.S1_a_at CD393550 - - 3e-27 At4g27700 rhodanese-like domain-containing protein C.G. S.X.
0.19 1e-15 83 Hordeum vulgare Contig7298_at Contig7298 - - 6e-13 At4g27700 rhodanese-like domain-containing protein C.G. S.X.
0.15 2e-17 91 Oryza sativa Os09g0530000 AK062568.1 - Rhodanese-like domain containing protein 2e-7 At4g27700 rhodanese-like domain-containing protein C.G. S.X.
0.21 1e-29 131 Triticum aestivum Ta.26822.1.A1_at CD491337 - - 2e-8 At4g27700 rhodanese-like domain-containing protein C.G. S.X.
0.25 9e-46 182 Vitis vinifera 1607381_at CB973030 hypothetical protein LOC100245212 - 7e-5 At4g27700 rhodanese-like domain-containing protein C.G. S.X.
0.19 2e-22 105 Zea mays Zm.8887.1.A1_at BM336157 rhodanese-like domain containing protein - 1e-7 At4g27700 rhodanese-like domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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