Gene omics information

Query gene ID	PtpAffx.55455.1.S1_a_at
Gene name	beta-ketoacyl-coa synthase family protein /// beta-ketoacyl-coa synthase family protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.2	PtpAffx.55455.1.S1_a_at	CV242141	beta-ketoacyl-coa synthase family protein /// beta-ketoacyl-coa synthase family protein	-	4e-12	At1g04220	KCS2 (3-KETOACYL-COA SYNTHASE 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.53	80.5	PtpAffx.7369.1.A1_at	BP930064	hypothetical protein	-	2e-5	At5g64510	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.48	75.4	PtpAffx.23797.2.S1_at	CV248730	hypothetical protein	-	7e-16	At4g20870	FAH2 (FATTY ACID HYDROXYLASE 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	Ptp.5292.1.S1_s_at	CV249488	hypothetical protein	-	5e-1	At1g55330	AGP21	S.X.	H.G.	Please selecteFP Browser (expression)
0.26	45.2	Ptp.4040.1.S1_s_at	BU861549	hypothetical protein	-	2e+0	At4g21000	ACA6 (ALPHA CARBONIC ANHYDRASE 6)	S.X.	H.G.	Please selecteFP Browser (expression)
0.11	18.1	Ptp.6875.1.S1_s_at	CV234546	hypothetical protein	-	1e-22	At1g31812	ACBP6 (acyl-CoA-binding protein 6)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.7	97.9	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
6.3	97.7	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.2	96.8	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.2	95.6	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.2	95.6	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.7	94.7	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.7	91.8	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.38	2e-48	194	Ptp.6592.1.A1_s_at	CK319937	hypothetical protein /// beta-ketoacyl-coa synthase family protein /// beta-ketoacyl-coa synthase family protein /// beta-ketoacyl-coa synthase family protein	-	4e-30	At5g43760	KCS20 (3-KETOACYL-COA SYNTHASE 20)	C.G.	S.X.	Please selecteFP Browser (expression)
0.26	1e-31	139	Ptp.3386.1.S1_s_at	CV245898	beta-ketoacyl-coa synthase family protein	-	3e-22	At2g26640	KCS11 (3-KETOACYL-COA SYNTHASE 11)	C.G.	S.X.	Please selecteFP Browser (expression)
0.16	5e-31	137	PtpAffx.224524.1.S1_at	pmrna43143	beta-ketoacyl-coa synthase family protein	-	1e-21	At2g26640	KCS11 (3-KETOACYL-COA SYNTHASE 11)	C.G.	S.X.	Please selecteFP Browser (expression)
0.06	6e-12	73	PtpAffx.55242.1.S1_at	CV236376	beta-ketoacyl-coa synthase family protein	-	8e-17	At2g26250	KCS10 (3-KETOACYL-COA SYNTHASE 10)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	9e-8	59	PtpAffx.224897.1.S1_at	pmrna43819	hypothetical protein	-	3e-40	At1g19440	KCS4 (3-KETOACYL-COA SYNTHASE 4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	3e-7	57	PtpAffx.84165.1.A1_s_at	CK096674	hypothetical protein	-	2e-24	At1g19440	KCS4 (3-KETOACYL-COA SYNTHASE 4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	6e-6	54	PtpAffx.101967.1.A1_at	CV243030	-	-	2e-21	At1g01120	KCS1 (3-KETOACYL-COA SYNTHASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	1e-3	46	PtpAffx.224489.1.S1_at	pmrna43071	beta-ketoacyl-coa synthase family protein	-	1e-5	At5g43760	KCS20 (3-KETOACYL-COA SYNTHASE 20)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e-3	46	PtpAffx.150150.1.S1_s_at	CK114074	beta-ketoacyl-coa synthase family protein	-	2e-12	At2g26640	KCS11 (3-KETOACYL-COA SYNTHASE 11)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.21	4e-12	73	Arabidopsis thaliana	At1g04220	839578	KCS2 (3-KETOACYL-COA SYNTHASE 2)	Encodes KCS2, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.31	7e-67	256	Glycine max	Gma.10713.1.S1_a_at	CD406424	-	-	4e-30	At2g26640	KCS11 (3-KETOACYL-COA SYNTHASE 11)	C.G.	S.X.	Please select
0.11	8e-6	52	Hordeum vulgare	Contig5663_at	Contig5663	-	-	7e-11	At5g43760	KCS20 (3-KETOACYL-COA SYNTHASE 20)	C.G.	S.X.	Please select
0.06	1e-4	50	Oryza sativa	Os05g0574600	AK070754.1	-	Fatty acid elongase 1-like protein	3e-13	At5g43760	KCS20 (3-KETOACYL-COA SYNTHASE 20)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.11	7e-8	59	Triticum aestivum	Ta.7498.2.A1_a_at	CA593590	-	-	6e-11	At5g43760	KCS20 (3-KETOACYL-COA SYNTHASE 20)	C.G.	S.X.	Please select
0.25	2e-57	222	Vitis vinifera	1612105_at	CF415846	hypothetical protein LOC100263066	-	4e-19	At2g26640	KCS11 (3-KETOACYL-COA SYNTHASE 11)	C.G.	S.X.	Please select
0.14	5e-13	75	Zea mays	Zm.295.1.A1_at	AI065608	fae2 protein	-	2e-20	At2g26640	KCS11 (3-KETOACYL-COA SYNTHASE 11)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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