Gene omics information

Query gene ID	PtpAffx.55242.1.S1_at
Gene name	beta-ketoacyl-coa synthase family protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	84.9	PtpAffx.55242.1.S1_at	CV236376	beta-ketoacyl-coa synthase family protein	-	8e-17	At2g26250	KCS10 (3-KETOACYL-COA SYNTHASE 10)	S.X.	H.G.	Please selecteFP Browser (expression)
0.11	18.1	PtpAffx.49413.1.S1_at	CX178932	hypothetical protein	-	8e-2	At1g10657	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.11	18.1	PtpAffx.219605.1.S1_at	pmrna35564	hypothetical protein	-	2e-2	At1g58440	XF1	S.X.	H.G.	Please selecteFP Browser (expression)
0.09	14.6	PtpAffx.95882.2.A1_s_at	CV227861	hypothetical protein	-	2e+0	At2g20180	PIL5 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 5)	S.X.	H.G.	Please selecteFP Browser (expression)
0.08	12.9	PtpAffx.249.124.A1_x_at	CV282001	hypothetical protein	-	1e-7	At2g47400	CP12-1	S.X.	H.G.	Please selecteFP Browser (expression)
0.03	5.2	PtpAffx.217577.1.S1_at	pmrna32901	glutamate-gated kainate-type ion channel receptor subunit GluR5	-	2e-2	At2g24720	ATGLR2.2	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.0	98.7	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
8.8	98.7	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
8.7	98.6	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
7.0	98.0	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.2	95.6	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.1	95.5	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.0	92.9	GSM372100	Clone3200_LPI5_N+_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6	91.3	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM372044	Clone1979_LPI5_N+_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM372099	Clone3200_LPI5_N+_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	3e-17	91	Ptp.2963.1.A1_at	DN488586	-	-	3e-1	At5g12070	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.06	6e-12	73	PtpAffx.55455.1.S1_a_at	CV242141	beta-ketoacyl-coa synthase family protein /// beta-ketoacyl-coa synthase family protein	-	4e-12	At1g04220	KCS2 (3-KETOACYL-COA SYNTHASE 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	4e-10	67	Ptp.6592.1.A1_s_at	CK319937	hypothetical protein /// beta-ketoacyl-coa synthase family protein /// beta-ketoacyl-coa synthase family protein /// beta-ketoacyl-coa synthase family protein	-	4e-30	At5g43760	KCS20 (3-KETOACYL-COA SYNTHASE 20)	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	4e-10	67	Ptp.3386.1.S1_s_at	CV245898	beta-ketoacyl-coa synthase family protein	-	3e-22	At2g26640	KCS11 (3-KETOACYL-COA SYNTHASE 11)	C.G.	S.X.	Please selecteFP Browser (expression)
0.08	4e-7	57	PtpAffx.206214.1.S1_at	pmrna12338	-	-	8e-7	At3g52160	KCS15 (3-KETOACYL-COA SYNTHASE 15)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e-6	54	PtpAffx.22948.1.S1_at	CX655388	beta-ketoacyl-coa synthase family protein	-	2e-5	At1g07720	KCS3 (3-KETOACYL-COA SYNTHASE 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.06	6e-6	54	PtpAffx.224411.1.S1_x_at	pmrna42910	hypothetical protein	-	2e-124	At2g16280	KCS9 (3-KETOACYL-COA SYNTHASE 9)	C.G.	S.X.	Please selecteFP Browser (expression)
0.06	6e-6	54	PtpAffx.224411.1.S1_at	pmrna42910	hypothetical protein	-	2e-124	At2g16280	KCS9 (3-KETOACYL-COA SYNTHASE 9)	C.G.	S.X.	Please selecteFP Browser (expression)
0.06	6e-6	54	PtpAffx.224411.1.S1_s_at	pmrna42910	hypothetical protein	-	2e-124	At2g16280	KCS9 (3-KETOACYL-COA SYNTHASE 9)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.27	8e-17	89	Arabidopsis thaliana	At2g26250	817165	KCS10 (3-KETOACYL-COA SYNTHASE 10)	epidermis-specific, encodes KCS10, a putative 3-ketoacyl-CoA synthase. probably involved in the synthesis of long-chain lipids found in the cuticle.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.41	2e-33	145	Glycine max	GmaAffx.25347.1.S1_at	AI856243	-	-	5e-18	At2g26250	KCS10 (3-KETOACYL-COA SYNTHASE 10)	C.G.	S.X.	Please select
0.08	1e-13	77	Hordeum vulgare	Contig4206_at	Contig4206	FIDDLEHEAD very long chain fatty acid condensing enzyme FDH;1-like	-	4e-3	At2g26250	KCS10 (3-KETOACYL-COA SYNTHASE 10)	C.G.	S.X.	Please select
0.12	1e-4	50	Oryza sativa	Os05g0574600	AK070754.1	-	Fatty acid elongase 1-like protein	3e-13	At5g43760	KCS20 (3-KETOACYL-COA SYNTHASE 20)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.08	3e-7	57	Triticum aestivum	Ta.369.1.S1_x_at	CA722433	-	-	4e-3	At2g26250	KCS10 (3-KETOACYL-COA SYNTHASE 10)	C.G.	S.X.	Please select
0.05	5e-3	42	Vitis vinifera	1611872_at	CF404465	hypothetical protein LOC100266256	-	8e-50	At2g26640	KCS11 (3-KETOACYL-COA SYNTHASE 11)	C.G.	S.X.	Please select
0.08	7e-3	42	Zea mays	Zm.295.1.A1_at	AI065608	fae2 protein	-	2e-20	At2g26640	KCS11 (3-KETOACYL-COA SYNTHASE 11)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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