Gene omics information

Query gene ID	PtpAffx.54956.1.A1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	96.0	PtpAffx.54956.1.A1_s_at	BP934948	hypothetical protein	-	5e-4	At1g71695	peroxidase 12 (PER12) (P12) (PRXR6)	S.X.	H.G.	Please selecteFP Browser (expression)
0.73	93.6	Ptp.2344.1.A1_x_at	CV243674	hypothetical protein	-	2e-4	At1g71695	peroxidase 12 (PER12) (P12) (PRXR6)	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.35633.1.A1_at	CV274877	nbs-lrr resistance protein	-	1e-1	At5g35610	paired amphipathic helix repeat-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	Ptp.2344.1.A1_at	CV243674	hypothetical protein	-	2e-4	At1g71695	peroxidase 12 (PER12) (P12) (PRXR6)	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.52305.1.S1_a_at	CK090487	hypothetical protein	-	2e-6	At1g04400	CRY2 (CRYPTOCHROME 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	Ptp.4795.1.S1_s_at	CA925817	nbs-lrr resistance protein	-	2e-3	At5g04720	ADR1-L2 (ADR1-like 2)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.4	97.7	GSM244432	non infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
6.3	97.7	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
6.0	97.5	GSM244436	Mmd infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
5.7	97.3	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.8	94.9	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.2	93.5	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.1	93.2	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.9	92.5	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.30	4e-132	470	Ptp.2344.1.A1_at	CV243674	hypothetical protein	-	2e-4	At1g71695	peroxidase 12 (PER12) (P12) (PRXR6)	C.G.	S.X.	Please selecteFP Browser (expression)
0.30	4e-132	470	Ptp.2344.1.A1_x_at	CV243674	hypothetical protein	-	2e-4	At1g71695	peroxidase 12 (PER12) (P12) (PRXR6)	C.G.	S.X.	Please selecteFP Browser (expression)
0.48	5e-79	293	PtpAffx.43381.1.A1_at	CV274494	-	-	4e-1	At1g71695	peroxidase 12 (PER12) (P12) (PRXR6)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e-2	40	PtpAffx.224655.1.S1_at	pmrna43407	hypothetical protein	-	8e-26	At1g25450	KCS5 (3-KETOACYL-COA SYNTHASE 5)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e-2	40	PtpAffx.224655.1.S1_s_at	pmrna43407	hypothetical protein	-	8e-26	At1g25450	KCS5 (3-KETOACYL-COA SYNTHASE 5)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	3e+0	32	PtpAffx.94601.1.A1_at	CV280245	-	-	1e+0	At1g66475	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	3e+0	32	PtpAffx.78267.1.S1_s_at	CV249797	hypothetical protein	-	1e-4	At4g02600	MLO1	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	3e+0	32	PtpAffx.35362.2.A1_s_at	DN494133	hypothetical protein	-	9e-1	At2g01270	AtQSOX2 (quiescin-sulfhydryl oxidase 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	3e+0	32	PtpAffx.249.26.A1_s_at	BP933372	hypothetical protein	-	1e-8	At1g71695	peroxidase 12 (PER12) (P12) (PRXR6)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	5e-4	44	Arabidopsis thaliana	At1g71695	843498	peroxidase 12 (PER12) (P12) (PRXR6)	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cell wall, vacuole, membrane, plant-type cell wall;PFOB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	7e-1	34	Glycine max	GmaAffx.22627.1.S1_at	BG352722	-	-	4e-2	At1g18520	TET11 (TETRASPANIN11)	C.G.	S.X.	Please select
0.03	4e+0	30	Hordeum vulgare	Contig10081_at	Contig10081	-	-	2e+0	At4g28365	plastocyanin-like domain-containing protein	C.G.	S.X.	Please select
0.05	4e+0	32	Oryza sativa	OsAffx.11673.2.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	9e+0	30	Triticum aestivum	TaAffx.54534.1.S1_at	CA680306	-	-	2e-1	At4g36260	STY2 (STYLISH 2)	C.G.	S.X.	Please select
0.05	2e+0	30	Vitis vinifera	1622511_at	CB975737	-	-	8e+0	At5g03200	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.04	1e+1	28	Zea mays	ZmAffx.146.1.A1_at	AI667826	30S ribosomal protein S31	-	2e-1	At4g21450	vesicle-associated membrane family protein / VAMP family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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