CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.549.1.A1_s_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 88.1 PtpAffx.549.1.A1_s_at CV247729 hypothetical protein - 1e-31 At1g74050 60S ribosomal protein L6 (RPL6C) S.X. H.G.
0.67 91.1 Ptp.1417.1.S1_at CV266482 hypothetical protein - 2e-59 At5g10360 EMB3010 (embryo defective 3010) S.X. H.G.
0.50 78.6 Ptp.1417.1.S1_x_at CV266482 hypothetical protein - 2e-59 At5g10360 EMB3010 (embryo defective 3010) S.X. H.G.
0.35 59.7 Ptp.1555.1.S1_a_at CV263349 hypothetical protein - 7e-31 At3g10950 60S ribosomal protein L37a (RPL37aB) S.X. H.G.
0.20 34.6 PtpAffx.6016.1.S1_at CV250853 hypothetical protein - 2e-42 At4g18100 60S ribosomal protein L32 (RPL32A) S.X. H.G.
0.17 29.1 Ptp.2574.1.S1_at CV251969 hypothetical protein - 2e-55 At5g20290 40S ribosomal protein S8 (RPS8A) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.0 98.9 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.6 96.2 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.1 95.5 GSM327406 Populus balsamifera_1006_young_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.5 94.3 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.1 93.2 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.2 89.3 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.0 88.0 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.9 87.2 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.64 1e-106 387 PtpAffx.5474.1.A1_at CV246512 hypothetical protein - 2e-1 At5g24890 unknown protein C.G. S.X.
0.02 8e-3 42 PtpAffx.212858.1.S1_x_at pmrna25162 hypothetical protein - 3e-80 At3g12860 nucleolar protein Nop56, putative C.G. S.X.
0.02 8e-3 42 PtpAffx.212858.1.S1_s_at pmrna25162 hypothetical protein - 3e-80 At3g12860 nucleolar protein Nop56, putative C.G. S.X.
0.01 3e-2 40 PtpAffx.201543.1.S1_at pmrna3038 bromodomain protein - 7e-36 At1g20670 DNA-binding bromodomain-containing protein C.G. S.X.
0.01 3e-2 40 PtpAffx.201543.1.S1_s_at pmrna3038 bromodomain protein - 7e-36 At1g20670 DNA-binding bromodomain-containing protein C.G. S.X.
0.03 3e-2 40 PtpAffx.120111.1.S1_s_at CX185810 bromodomain protein - 2e-33 At1g20670 DNA-binding bromodomain-containing protein C.G. S.X.
0.02 1e-1 38 PtpAffx.421.1.A1_at CV242625 hypothetical protein - 7e-28 At3g12860 nucleolar protein Nop56, putative C.G. S.X.
0.02 1e-1 38 Ptp.4943.1.S1_s_at CV249629 hypothetical protein - 2e-99 At1g20090 ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2) C.G. S.X.
0.02 1e-1 38 Ptp.4943.1.S1_at CV249629 hypothetical protein - 2e-99 At1g20090 ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.34 1e-31 137 Arabidopsis thaliana At1g74050 843744 60S ribosomal protein L6 (RPL6C) F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, intracellular, plasma membrane, membrane;MOFPA - - - C.G. S.X.
0.29 5e-38 159 Glycine max Gma.10826.4.S1_at AI442855 - - 5e-35 At1g74050 60S ribosomal protein L6 (RPL6C) C.G. S.X.
0.10 1e-14 79 Hordeum vulgare Contig1248_s_at Contig1248 - - 3e-8 At1g74060 60S ribosomal protein L6 (RPL6B) C.G. S.X.
0.14 2e-13 77 Oryza sativa Os04g0473400 AK067896.1 - 60S ribosomal protein L6 2e-6 At1g74050 60S ribosomal protein L6 (RPL6C) C.G. S.X.
0.08 4e-4 46 Triticum aestivum Ta.28291.1.S1_at BJ318276 Ribosomal protein L6 - 2e-1 At1g74050 60S ribosomal protein L6 (RPL6C) C.G. S.X.
0.34 1e-50 198 Vitis vinifera 1616712_at BQ797208 hypothetical protein LOC100252724 - 3e-45 At1g74050 60S ribosomal protein L6 (RPL6C) C.G. S.X.
0.10 2e-4 46 Zea mays Zm.14473.2.A1_at CK347999 hypothetical protein LOC100191612 - 8e-3 At1g74060 60S ribosomal protein L6 (RPL6B) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage