Gene omics information

Query gene ID	PtpAffx.54430.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	84.2	PtpAffx.54430.1.S1_at	DN502885	hypothetical protein	-	7e-24	At5g63040	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.220314.1.S1_at	pmrna36684	hypothetical protein	-	6e-1	At5g62750	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.220019.1.S1_at	pmrna36261	hypothetical protein	-	1e-21	At4g17140	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.14	23.5	PtpAffx.217296.1.S1_at	pmrna32498	hypothetical protein	-	1e+0	At2g27130	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.12	19.6	PtpAffx.205232.1.S1_at	pmrna10374	hypothetical protein	-	3e-1	At4g29930	basic helix-loop-helix (bHLH) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.11	18.1	PtpAffx.214754.1.S1_at	pmrna28589	hypothetical protein	-	2e+1	At4g21780	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.10	16.3	PtpAffx.101665.1.A1_at	CV256040	-	-	6e+0	At5g67010	AP2 domain-containing transcription factor, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.09	14.6	PtpAffx.58110.1.S1_at	CN520163	hypothetical protein	-	3e-17	At3g04830	binding	S.X.	H.G.	Please selecteFP Browser (expression)
0.07	11.6	PtpAffx.201832.1.S1_at	pmrna3650	hypothetical protein	-	2e-5	At1g77010	pentatricopeptide (PPR) repeat-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.07	11.6	RPTR-Ptp-J01636-1_at	RPTR-Ptp-J01636-1	-	-	0			S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.1	98.5	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
7.2	98.1	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
6.9	98.0	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
6.0	97.5	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.3	95.8	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.0	92.9	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.44	0	644	PtpAffx.210602.1.S1_at	pmrna20800	hypothetical protein	-	6e-22	At5g63040	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.13	6e-16	85	PtpAffx.88282.1.A1_at	CV273670	-	-	1e+0	At1g49290	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	5e-1	36	PtpAffx.212581.1.S1_at	pmrna24645	hypothetical protein	-	5e-1	At3g05700	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e-1	36	PtpAffx.107813.1.A1_at	CV259957	hypothetical protein	-	8e-12	At3g10700	GHMP kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e-1	36	PtpAffx.107813.1.A1_s_at	CV259957	hypothetical protein	-	8e-12	At3g10700	GHMP kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e-1	36	Ptp.4336.1.S1_at	CV256598	hypothetical protein	-	8e-46	At2g36130	peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e-1	36	Ptp.4336.1.S1_x_at	CV256598	hypothetical protein	-	8e-46	At2g36130	peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.69786.1.S1_at	CV243501	hypothetical protein	-	9e-24	At5g05170	CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.36741.1.S1_at	CK093908	hypothetical protein	-	1e+0	At5g06900	CYP93D1	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	7e-24	111	Arabidopsis thaliana	At5g63040	836424	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	Gma.14187.1.A1_at	CD417233	-	-	1e+1	At5g11680	unknown protein	C.G.	S.X.	Please select
0.11	1e-5	50	Hordeum vulgare	Contig26400_at	Contig26400	-	-	2e-5	At5g63040	unknown protein	C.G.	S.X.	Please select
0.13	1e-14	81	Oryza sativa	Os01g0704200	9629.m04922	-	Conserved hypothetical protein	9e-12	At5g63040	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	9e-2	38	Triticum aestivum	TaAffx.78189.1.S1_at	CA736276	-	-	3e+0	At4g19340	-	C.G.	S.X.	Please select
0.03	1e-1	36	Vitis vinifera	1608782_at	CA811028	-	-	2e-1	At4g21790	TOM1 (TOBAMOVIRUS MULTIPLICATION 1)	C.G.	S.X.	Please select
0.16	1e-8	59	Zea mays	Zm.2635.1.A1_at	CF244162	hypothetical protein LOC100216945	-	7e-9	At5g63040	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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