Gene omics information

Query gene ID	PtpAffx.54366.1.A1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	91.1	PtpAffx.54366.1.A1_at	CK087841	hypothetical protein	-	7e-3	At4g31820	ENP (ENHANCER OF PINOID)	S.X.	H.G.	Please selecteFP Browser (expression)
0.48	75.4	PtpAffx.94841.1.A1_at	CV269108	hypothetical protein	-	2e+0	At1g27950	LTPG1 (GLYCOSYLPHOSPHATIDYLINOSITOL-ANCHORED LIPID PROTEIN TRANSFER 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.42	68.6	PtpAffx.12086.2.A1_at	BP933599	hypothetical protein	-	7e-14	At5g19750	peroxisomal membrane 22 kDa family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.38	63.7	PtpAffx.211939.1.S1_s_at	pmrna23444	hypothetical protein	-	1e-37	At2g04280	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.38	63.7	PtpAffx.11324.1.A1_at	CV270661	hypothetical protein	-	5e-19	At3g24570	peroxisomal membrane 22 kDa family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.3647.1.A1_at	CV230293	hypothetical protein	-	9e-5	At2g26680	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.28	50.5	Ptp.5533.1.S1_at	CV283037	hypothetical protein	-	4e-36	At5g20720	CPN20 (CHAPERONIN 20)	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	Ptp.744.1.A1_at	CV257858	hypothetical protein	-	2e-34	At3g49470	NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.90782.1.S1_s_at	CK091819	hypothetical protein	-	2e+0	At1g06920	OFP4 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4)	S.X.	H.G.	Please selecteFP Browser (expression)
0.25	43.6	Ptp.3842.1.A1_a_at	CV256192	hypothetical protein	-	1e-1	At5g13470	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.6	97.9	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.8	96.4	GSM327359	Populus balsamifera_20071015_Seedling_continuous_light_6d_3	GSE13990	Populus balsamifera developmental tissue series
4.8	96.4	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.7	96.3	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.7	96.3	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.5	96.1	GSM327358	Populus balsamifera_20071015_Seedling_continuous_light_6d_2	GSE13990	Populus balsamifera developmental tissue series
4.5	96.1	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e-2	40	Ptp.431.1.A1_at	CK089091	hypothetical protein	-	6e-3	At1g67900	phototropic-responsive NPH3 family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	4e-2	40	Ptp.2053.1.A1_at	DN484963	hypothetical protein	-	7e-29	At1g30440	phototropic-responsive NPH3 family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e-1	38	PtpAffx.214193.1.S1_x_at	pmrna27615	hypothetical protein	-	8e-71	At2g25520	phosphate translocator-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e-1	38	PtpAffx.214193.1.S1_at	pmrna27615	hypothetical protein	-	8e-71	At2g25520	phosphate translocator-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e-1	38	PtpAffx.13609.1.S1_at	CX167472	hypothetical protein	-	2e-11	At1g30440	phototropic-responsive NPH3 family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	6e-1	36	PtpAffx.24677.1.A1_at	CV250919	-	-	2e-1	At4g37200	HCF164	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	6e-1	36	PtpAffx.221999.1.S1_s_at	pmrna39183	cytochrome P450 /// cytochrome P450	-	3e+0	At4g21920	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	6e-1	36	PtpAffx.221999.1.S1_at	pmrna39183	cytochrome P450	-	3e+0	At4g21920	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	6e-1	36	PtpAffx.219686.1.S1_at	pmrna35660	cytochrome P450	-	1e+0	At3g14650	CYP72A11	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	7e-3	42	Arabidopsis thaliana	At4g31820	829311	ENP (ENHANCER OF PINOID)	A member of the NPY family genes (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Encodes a protein with similarity to NHP3. Contains BTB/POZ domain. Promoter region has canonical auxin response element binding site and Wus binding site. Co-localizes to the late endosome with PID. Regulates cotyledon development through control of PIN1 polarity in concert with PID. Also involved in sepal and gynoecia development.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	1e-1	38	Glycine max	GmaAffx.6038.1.A1_at	BU551290	-	-	5e+0	At4g30230	unknown protein	C.G.	S.X.	Please select
0.03	8e-1	34	Hordeum vulgare	HV_CEb0007F22r2_at	HV_CEb0007F22r2	-	-	3e+0	At3g42140	nucleic acid binding / zinc ion binding	C.G.	S.X.	Please select
0.09	5e-2	40	Oryza sativa	Os10g0350100	NM_195936.1	-	-	4e-1	At3g47710	bHLH family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e-1	36	Triticum aestivum	Ta.18594.1.S1_at	CA639339	-	-	3e+0	At5g47330	palmitoyl protein thioesterase family protein	C.G.	S.X.	Please select
0.13	4e-17	87	Vitis vinifera	1609573_at	CB973015	hypothetical protein LOC100264499	-	1e+0	At3g50450	HR1 (HOMOLOG OF RPW8 1)	C.G.	S.X.	Please select
0.03	3e+0	32	Zea mays	ZmAffx.996.1.A1_at	AI857152	-	-	3e+0	At5g02230	haloacid dehalogenase-like hydrolase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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