Gene omics information

Query gene ID	PtpAffx.54313.2.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	94.9	PtpAffx.54313.2.S1_at	BU895504	hypothetical protein	-	6e-4	At2g34790	MEE23 (MATERNAL EFFECT EMBRYO ARREST 23)	S.X.	H.G.	Please selecteFP Browser (expression)
0.80	96.0	PtpAffx.124754.1.S1_at	CF228340	-	-	5e+0	At3g09750	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.106134.1.S1_at	DN495981	-	-	5e-2	At2g17240	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.62865.1.A1_at	CV275623	hypothetical protein	-	7e-1	At4g23270	protein kinase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.124754.1.S1_s_at	CF228340	-	-	5e+0	At3g09750	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.25	43.6	Ptp.478.1.A1_at	CK087253	hypothetical protein	-	4e-1	At4g25410	DNA binding / transcription factor	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.2	99.1	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
10.8	99.1	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
9.0	98.7	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.7	97.9	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.5	97.8	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.3	97.7	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.1	95.5	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.6	94.5	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.5	94.3	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	2082	PtpAffx.54313.2.S1_a_at	BU895504	-	-	6e-4	At2g34790	MEE23 (MATERNAL EFFECT EMBRYO ARREST 23)	C.G.	S.X.	Please selecteFP Browser (expression)
0.57	0	704	Ptp.732.1.A1_at	CV258963	hypothetical protein	-	5e-7	At5g44380	FAD-binding domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.32	6e-63	242	PtpAffx.64568.2.S1_a_at	DN490916	hypothetical protein	-	2e-2	At2g34790	MEE23 (MATERNAL EFFECT EMBRYO ARREST 23)	C.G.	S.X.	Please selecteFP Browser (expression)
0.48	3e-62	240	PtpAffx.224218.1.S1_at	pmrna42563	hypothetical protein	-	3e-6	At5g44400	FAD-binding domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.48	1e-54	214	PtpAffx.224796.1.S1_s_at	pmrna43650	hypothetical protein	-	5e-5	At2g34790	MEE23 (MATERNAL EFFECT EMBRYO ARREST 23)	C.G.	S.X.	Please selecteFP Browser (expression)
0.34	1e-51	204	PtpAffx.225252.1.S1_at	pmrna44468	hypothetical protein	-	1e-5	At2g34790	MEE23 (MATERNAL EFFECT EMBRYO ARREST 23)	C.G.	S.X.	Please selecteFP Browser (expression)
0.23	2e-50	200	Ptp.732.2.S1_at	CA934320	hypothetical protein	-	1e-7	At5g44390	FAD-binding domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.31	2e-47	190	PtpAffx.3369.1.S1_a_at	DN503502	-	-	2e-1	At5g44380	FAD-binding domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.22	3e-34	147	PtpAffx.37311.1.A1_at	CV256718	hypothetical protein	-	3e-11	At5g44380	FAD-binding domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	6e-4	46	Arabidopsis thaliana	At2g34790	818044	MEE23 (MATERNAL EFFECT EMBRYO ARREST 23)	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:embryonic development ending in seed dormancy, polar nucleus fusion;C:cell wall;BFPOAM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.17	5e-8	59	Glycine max	Gma.4687.1.S1_at	AW309716	-	-	7e-4	At5g44400	FAD-binding domain-containing protein	C.G.	S.X.	Please select
0.05	1e-6	54	Hordeum vulgare	Contig15475_at	Contig15475	-	-	4e-2	At4g20860	FAD-binding domain-containing protein	C.G.	S.X.	Please select
0.04	1e-3	46	Oryza sativa	OsAffx.5020.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	2e-6	54	Triticum aestivum	Ta.11025.1.A1_at	BQ168402	-	-	4e-1	At4g20860	FAD-binding domain-containing protein	C.G.	S.X.	Please select
0.03	1e-5	50	Vitis vinifera	1613586_at	CF513392	hypothetical protein LOC100245607	-	2e-3	At4g20830	FAD-binding domain-containing protein	C.G.	S.X.	Please select
0.07	6e-8	57	Zea mays	Zm.9216.1.A1_at	BM267379	hypothetical protein LOC100276794	-	9e-2	At5g44380	FAD-binding domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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