Gene omics information

Query gene ID PtpAffx.54313.1.S1_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.6791.1PtpAffx.54313.1.S1_atAI166744hypothetical protein-2e-9At5g44390FAD-binding domain-containing proteinS.X.H.G.
0.4369.7PtpAffx.85797.1.S1_s_atBU812872hypothetical protein-3e-1At1g01540protein kinase family proteinS.X.H.G.
0.1626.9PtpAffx.54313.2.S1_a_atBU895504--6e-4At2g34790MEE23 (MATERNAL EFFECT EMBRYO ARREST 23)S.X.H.G.
0.1118.1Ptp.2927.2.S1_atDN499742tubulin gamma complex-associated protein /// tubulin gamma complex-associated protein-5e-47At5g06680SPC98 (SPINDLE POLE BODY COMPONENT 98)S.X.H.G.
0.0812.9PtpAffx.136498.1.S1_atCF230021hypothetical protein-6e-3At1g52260ATPDIL1-5 (PDI-LIKE 1-5)S.X.H.G.
0.046.9PtpAffx.205886.1.S1_atpmrna11667hypothetical protein-7e-1At2g42880ATMPK20S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
11.299.1GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplar
9.498.8GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplar
8.898.7GSM328534Populus x canescens root control_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplar
6.697.9GSM328560Populus x canescens root control_rep_11GSE13109Effect of hypoxia on gene expression in Grey poplar
5.296.8GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplar
5.096.6GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.696.2GSM328292Populus x canescens root control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplar
3.092.9GSM328559Populus x canescens root control_rep_10GSE13109Effect of hypoxia on gene expression in Grey poplar
2.791.8GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue series
2.791.8GSM328275Populus x canescens leaf hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplar
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.551e-171603Ptp.732.2.S1_atCA934320hypothetical protein-1e-7At5g44390FAD-binding domain-containing proteinC.G.S.X.
0.323e-73276PtpAffx.224218.1.S1_atpmrna42563hypothetical protein-3e-6At5g44400FAD-binding domain-containing proteinC.G.S.X.
0.312e-65250PtpAffx.224796.1.S1_s_atpmrna43650hypothetical protein-5e-5At2g34790MEE23 (MATERNAL EFFECT EMBRYO ARREST 23)C.G.S.X.
0.255e-35149PtpAffx.3369.1.S1_a_atDN503502--2e-1At5g44380FAD-binding domain-containing proteinC.G.S.X.
0.245e-32139PtpAffx.225253.1.S1_atpmrna44474hypothetical protein-1e-2At5g44410FAD-binding domain-containing proteinC.G.S.X.
0.278e-31135PtpAffx.225252.1.S1_atpmrna44468hypothetical protein-1e-5At2g34790MEE23 (MATERNAL EFFECT EMBRYO ARREST 23)C.G.S.X.
0.297e-25115PtpAffx.224219.1.S1_atpmrna42564hypothetical protein-1e-1At5g44390FAD-binding domain-containing proteinC.G.S.X.
0.144e-1479PtpAffx.201460.1.S1_atpmrna2874hypothetical protein-9e-5At5g44390FAD-binding domain-containing proteinC.G.S.X.
0.112e-1377PtpAffx.1501.1.A1_atCV265283--7e-1At1g12090ELP (EXTENSIN-LIKE PROTEIN)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.112e-963Arabidopsis thalianaAt5g44390834465FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFOPMA---C.G.S.X.
0.244e-26119Glycine maxGmaAffx.93045.1.S1_atCF808770--6e-18At5g44390FAD-binding domain-containing proteinC.G.S.X.
0.043e+032Hordeum vulgareHVSMEm0017K24r2_atHVSMEm0017K24r2--1e+0At1g08340rac GTPase activating protein, putativeC.G.S.X.
0.031e+132Oryza sativaOs01g0589700NM_192570.1-Conserved hypothetical protein3e-1At1g55475unknown proteinC.G.S.X.
0.032e+034Triticum aestivumTaAffx.85924.1.S1_atCA618385--3e+0At5g40590DC1 domain-containing proteinC.G.S.X.
0.031e-136Vitis vinifera1616137_atCF512936hypothetical protein LOC100241403-2e-1At4g24250MLO13 (MILDEW RESISTANCE LOCUS O 13)C.G.S.X.
0.036e-134Zea maysZm.7750.4.S1_x_atAW499152--3e-28At1g75780TUB1C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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