Gene omics information

Query gene ID	PtpAffx.5430.3.S1_a_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.2	PtpAffx.5430.3.S1_a_at	CV242643	hypothetical protein	-	1e-112	At1g19910	AVA-P2	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.6381.1.S1_at	CV265918	integral membrane single C2 domain protein /// integral membrane single C2 domain protein	-	6e-10	At3g61050	NTMC2T4	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	Ptp.2592.2.S1_x_at	CX185841	thioredoxin h	-	8e-6	At1g45145	ATTRX5	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.48549.1.A1_at	CK096134	hypothetical protein	-	2e-17	At2g16800	high-affinity nickel-transport family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.34296.2.S1_at	CV256170	hypothetical protein	-	8e-6	At3g28140	calmodulin-binding protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.14	23.5	Ptp.514.1.A1_s_at	CV258507	hypothetical protein	-	2e-18	At2g20360	binding / catalytic/ coenzyme binding	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.5	94.3	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.3	93.7	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.3	93.7	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.1	93.2	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.5	90.9	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4	90.4	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2	89.3	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.60	0	1074	PtpAffx.5430.4.S1_a_at	CX170063	hypothetical protein	-	4e-116	At1g19910	AVA-P2	C.G.	S.X.	Please selecteFP Browser (expression)
0.66	0	801	PtpAffx.5430.1.S1_at	CF228221	hypothetical protein	-	1e-103	At1g19910	AVA-P2	C.G.	S.X.	Please selecteFP Browser (expression)
0.66	0	801	PtpAffx.5430.1.S1_x_at	CF228221	hypothetical protein	-	1e-103	At1g19910	AVA-P2	C.G.	S.X.	Please selecteFP Browser (expression)
0.43	2e-80	299	PtpAffx.56733.1.A1_s_at	CV256568	hypothetical protein	-	5e-90	At1g75630	AVA-P4	C.G.	S.X.	Please selecteFP Browser (expression)
0.39	1e-75	284	Ptp.800.1.S1_s_at	CV275558	-	-	5e-115	At2g16510	vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5)	C.G.	S.X.	Please selecteFP Browser (expression)
0.35	1e-72	274	Ptp.2450.1.S1_at	CV258657	hypothetical protein	-	9e-111	At2g16510	vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5)	C.G.	S.X.	Please selecteFP Browser (expression)
0.46	8e-68	258	PtpAffx.909.1.S1_a_at	CX175894	hypothetical protein	-	4e-69	At2g16510	vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	5e-1	36	PtpAffx.43824.2.A1_at	CK088998	-	-	7e+0	At5g53610	glycosyl hydrolase family protein 17	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e-1	36	PtpAffx.43824.1.S1_at	CV257164	hypothetical protein	-	3e-11	At5g64200	ATSC35	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.67	1e-112	406	Arabidopsis thaliana	At1g19910	838579	AVA-P2	vacuolar H+-pumping ATPase 16 kDa proteolipid (ava-p2)	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.50	9e-83	307	Glycine max	GmaAffx.92173.1.S1_s_at	CF807898	-	-	6e-86	At4g34720	AVA-P1	C.G.	S.X.	Please select
0.45	3e-62	238	Hordeum vulgare	Contig2159_at	Contig2159	-	-	7e-68	At1g75630	AVA-P4	C.G.	S.X.	Please select
0.41	7e-32	139	Oryza sativa	Os12g0168900	AK071641.1	-	-	4e-51	At4g38920	ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.55	3e-57	222	Triticum aestivum	TaAffx.85981.4.S1_at	CA626243	-	-	2e-60	At4g38920	ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3)	C.G.	S.X.	Please select
0.49	2e-80	297	Vitis vinifera	1606789_at	CF415022	similar to vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5)	-	7e-83	At4g34720	AVA-P1	C.G.	S.X.	Please select
0.42	3e-61	234	Zea mays	Zm.1067.1.A1_at	BM267163	V-type H+-ATPase	-	3e-70	At1g75630	AVA-P4	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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