Gene omics information

Query gene ID	PtpAffx.54256.2.A1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	96.0	PtpAffx.54256.2.A1_s_at	CV229094	hypothetical protein	-	8e-33	At4g24240	WRKY7	S.X.	H.G.	Please selecteFP Browser (expression)
0.77	94.9	PtpAffx.88716.1.A1_at	CV255605	-	-	4e+0	At5g50345	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.204410.1.S1_s_at	pmrna8664	hypothetical protein	-	7e-60	At2g27350	OTU-like cysteine protease family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.31	53.7	Ptp.7378.1.S1_at	DN495292	hypothetical protein	-	5e-19	At2g47070	SPL1 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.07	11.6	PtpAffx.677.1.A1_a_at	CV275836	hypothetical protein	-	7e-35	At1g79650	RAD23	S.X.	H.G.	Please selecteFP Browser (expression)
0.07	11.6	Ptp.598.1.A1_at	CV281520	hypothetical protein	-	4e-1	At3g16680	DNA binding / DNA-directed RNA polymerase	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.4	98.6	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
7.1	98.1	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
6.7	97.9	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
5.2	96.8	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.7	94.7	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.4	90.4	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.65	0	827	Ptp.726.1.A1_at	CV225822	hypothetical protein	-	1e-36	At4g24240	WRKY7	C.G.	S.X.	Please selecteFP Browser (expression)
0.38	6e-133	474	PtpAffx.202048.1.S1_at	pmrna4082	hypothetical protein	-	2e-32	At4g24240	WRKY7	C.G.	S.X.	Please selecteFP Browser (expression)
0.67	8e-111	400	PtpAffx.54256.1.A1_at	CV268729	-	-	4e-17	At4g24240	WRKY7	C.G.	S.X.	Please selecteFP Browser (expression)
0.19	3e-36	153	PtpAffx.63488.1.S1_at	CV232703	-	-	4e-10	At4g31550	WRKY11	C.G.	S.X.	Please selecteFP Browser (expression)
0.13	3e-33	143	PtpAffx.37459.1.S1_at	CK090406	hypothetical protein	-	3e-59	At2g30590	WRKY21	C.G.	S.X.	Please selecteFP Browser (expression)
0.21	1e-29	131	PtpAffx.63488.3.A1_at	CV273768	-	-	3e-17	At4g24240	WRKY7	C.G.	S.X.	Please selecteFP Browser (expression)
0.14	2e-25	117	Ptp.5362.1.S1_at	BI068425	hypothetical protein	-	5e-1	At1g28160	ethylene-responsive element-binding family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.15	2e-16	87	PtpAffx.61240.1.A1_at	DN487796	hypothetical protein	-	6e-40	At5g28650	WRKY74	C.G.	S.X.	Please selecteFP Browser (expression)
0.09	9e-15	81	PtpAffx.63488.4.A1_a_at	CV254683	-	-	8e-8	At4g31550	WRKY11	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.24	8e-33	141	Arabidopsis thaliana	At4g24240	828525	WRKY7	Encodes a Ca-dependent calmodulin binding protein. Sequence similarity to the WRKY transcription factor gene family.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.17	5e-7	56	Glycine max	Gma.3504.1.S1_at	BE823928	WRKY82	-	6e-21	At4g31550	WRKY11	C.G.	S.X.	Please select
0.10	7e-4	44	Hordeum vulgare	Contig7798_at	Contig7798	-	-	7e-13	At4g31550	WRKY11	C.G.	S.X.	Please select
0.08	3e-6	54	Oryza sativa	Os02g0462800	AK110587.1	-	WRKY transcription factor 42 (Transcription factorWRKY02)	3e-2	At4g24240	WRKY7	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	4e-1	36	Triticum aestivum	TaAffx.86717.1.S1_at	CA602133	WRKY16 transcription factor	-	7e-2	At3g04670	WRKY39	C.G.	S.X.	Please select
0.25	6e-31	133	Vitis vinifera	1611650_at	CA808599	hypothetical protein LOC100244122	-	3e-26	At2g23320	WRKY15	C.G.	S.X.	Please select
0.09	1e-1	36	Zea mays	Zm.1750.1.A1_at	BM073685	hypothetical protein LOC100191630	-	2e-9	At5g28650	WRKY74	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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