CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.5423.1.S1_s_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.5423.1.S1_s_at CV229504 hypothetical protein - 3e-24 At4g11820 MVA1 S.X. H.G.
0.83 97.0 Ptp.4515.1.S1_at CV253179 hypothetical protein - 5e-79 At5g47770 FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1) S.X. H.G.
0.67 91.1 Ptp.4515.1.S1_s_at CV253179 hypothetical protein - 5e-79 At5g47770 FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1) S.X. H.G.
0.59 84.9 PtpAffx.153434.1.A1_s_at CV264552 hypothetical protein - 2e-37 At5g47720 acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative S.X. H.G.
0.50 78.6 PtpAffx.147936.1.S1_s_at BP924717 hypothetical protein - 1e-21 At5g48230 ACAT2 (ACETOACETYL-COA THIOLASE 2) S.X. H.G.
0.24 41.8 Ptp.6668.1.S1_at CN523821 hypothetical protein - 4e-38 At5g48230 ACAT2 (ACETOACETYL-COA THIOLASE 2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
18.1 99.7 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
5.5 97.1 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.0 96.6 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.8 96.4 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.7 96.3 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.6 96.2 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.0 95.3 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.0 95.3 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.2 93.5 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.78 0 1312 Ptp.5999.1.S1_at BU886555 hypothetical protein - 1e-13 At4g11820 MVA1 C.G. S.X.
0.60 0 1277 PtpAffx.5423.3.S1_at CV242532 hypothetical protein - 2e-103 At4g11820 MVA1 C.G. S.X.
0.11 2e-38 161 PtpAffx.5423.4.S1_at CV229996 hypothetical protein - 2e-13 At5g16660 unknown protein C.G. S.X.
0.31 3e-25 117 PtpAffx.65114.1.A1_at CK094605 - - 5e-1 At1g34380 5'-3' exonuclease family protein C.G. S.X.
0.01 9e-1 36 PtpAffx.223290.1.S1_at pmrna41212 hypothetical protein - 6e-17 At5g39960 GTP-binding family protein C.G. S.X.
0.01 4e+0 34 PtpAffx.572.1.S1_at CK111156 AP2 domain-containing transcription factor - 4e-6 At1g68840 RAV2 (REGULATOR OF THE ATPASE OF THE VACUOLAR MEMBRANE) C.G. S.X.
0.01 4e+0 34 PtpAffx.50096.1.S1_at CV259042 hypothetical protein - 3e-5 At2g20280 zinc finger (CCCH-type) family protein C.G. S.X.
0.01 4e+0 34 PtpAffx.224890.1.S1_at pmrna43799 - - 1e-1 At4g18180 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.02 4e+0 34 PtpAffx.222443.1.S1_at pmrna39848 hypothetical protein - 2e+0 At5g20885 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.42 3e-24 113 Arabidopsis thaliana At4g11820 826788 MVA1 Encodes a protein with hydroxymethylglutaryl-CoA synthase activity which was characterized by phenotypical complementation of the S. cerevisiae mutant. - - - C.G. S.X.
0.44 2e-45 184 Glycine max Gma.13094.1.S1_at CD396464 - - 6e-32 At4g11820 MVA1 C.G. S.X.
0.23 4e-25 115 Hordeum vulgare Contig9135_at Contig9135 - - 1e-42 At4g11820 MVA1 C.G. S.X.
0.21 1e-28 129 Oryza sativa Os09g0521400 AK101064.1 - Hydroxymethylglutaryl coenzyme A synthase 8e-26 At4g11820 MVA1 C.G. S.X.
0.23 1e-17 91 Triticum aestivum Ta.2925.1.S1_x_at BJ277030 - - 3e-15 At4g11820 MVA1 C.G. S.X.
0.51 2e-149 527 Vitis vinifera 1611853_at BQ797611 hypothetical protein LOC100244379 - 3e-93 At4g11820 MVA1 C.G. S.X.
0.23 2e-20 99 Zea mays Zm.17569.1.S1_at CD446312 hydroxymethylglutaryl-CoA synthase - 8e-16 At4g11820 MVA1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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