Gene omics information

Query gene ID	PtpAffx.54125.1.A1_s_at
Gene name	cytochrome P450 /// cytochrome P450 /// cytochrome P450
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.75	94.1	PtpAffx.54125.1.A1_s_at	CK095265	cytochrome P450 /// cytochrome P450 /// cytochrome P450	-	3e+0	At5g57260	CYP71B10	S.X.	H.G.	Please selecteFP Browser (expression)
0.82	96.3	PtpAffx.207923.1.S1_at	pmrna15725	hypothetical protein	-	4e-20	At1g60470	AtGolS4 (Arabidopsis thaliana galactinol synthase 4)	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.63924.1.S1_at	BP931275	-	-	5e+0	At5g54110	ATMAMI (ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED MANNITOL-INDUCED)	S.X.	H.G.	Please selecteFP Browser (expression)
0.57	84.2	PtpAffx.46665.2.S1_at	DN492397	hypothetical protein	-	8e-2	At4g28690	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.57	84.2	PtpAffx.46665.1.S1_s_at	CV245219	hypothetical protein	-	3e-1	At1g51080	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.200041.1.S1_s_at	pmrna70	hypothetical protein	-	6e-1	At2g14750	APK (APS KINASE)	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.204008.1.S1_s_at	pmrna7902	hypothetical protein	-	2e-36	At1g73370	SUS6 (SUCROSE SYNTHASE 6)	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.107876.1.A1_at	CV262541	hypothetical protein	-	3e-2	At5g39220	hydrolase, alpha/beta fold family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
30.6	99.9	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
15.2	99.5	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
13.4	99.4	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
7.8	98.4	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
7.5	98.3	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
6.9	98.0	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.5	96.1	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.7	91.8	GSM244436	Mmd infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.1	78.0	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.0	76.2	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.67	0	870	Ptp.6116.1.S1_at	BU811435	cytochrome P450 /// cytochrome P450	-	2e-3	At4g31500	CYP83B1 (CYTOCHROME P450 MONOOXYGENASE 83B1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.34	5e-135	482	PtpAffx.217122.1.S1_at	pmrna32265	cytochrome P450	-	1e+0	At1g12530	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.31	5e-73	276	Ptp.5109.1.S1_at	BU810061	cytochrome P450 /// cytochrome P450 /// cytochrome P450	-	6e-2	At3g44250	CYP71B38	C.G.	S.X.	Please selecteFP Browser (expression)
0.15	2e-11	71	PtpAffx.224493.1.S1_at	pmrna43078	cytochrome P450	-	2e-1	At5g57260	CYP71B10	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e-3	46	PtpAffx.224155.1.S1_at	pmrna42426	cytochrome P450	-	2e-7	At4g31940	CYP82C4	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	6e-2	40	PtpAffx.43902.1.A1_a_at	BI124730	cytochrome P450 /// cytochrome P450 /// cytochrome P450 /// hypothetical protein	-	2e-3	At3g48320	CYP71A21	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e-2	40	PtpAffx.224992.1.S1_at	pmrna43963	cytochrome P450 /// cytochrome P450 /// cytochrome P450 /// hypothetical protein	-	2e-1	At4g13290	CYP71A19	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	6e-2	40	Ptp.7062.1.S1_at	CV270575	cytochrome P450	-	3e-1	At1g11610	CYP71A18	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-1	38	PtpAffx.225473.1.S1_at	pmrna44841	cytochrome P450	-	2e-7	At3g52970	CYP76G1	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e+0	34	Arabidopsis thaliana	At5g57260	835831	CYP71B10	putative cytochrome P450	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	9e-1	36	Glycine max	GmaAffx.93309.1.S1_s_at	CF808307	-	-	1e-5	At4g22710	CYP706A2	C.G.	S.X.	Please select
0.02	5e+0	32	Hordeum vulgare	Contig4271_at	Contig4271	-	-	2e+0	At4g09440	unknown protein	C.G.	S.X.	Please select
0.02	3e-1	38	Oryza sativa	Os.26968.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e+0	34	Triticum aestivum	Ta.11447.1.A1_at	BQ170124	-	-	3e+0	At5g11840	unknown protein	C.G.	S.X.	Please select
0.07	2e-4	46	Vitis vinifera	1621363_at	CA809467	hypothetical protein LOC100250687	-	5e-4	At1g13080	CYP71B2 (CYTOCHROME P450 71B2)	C.G.	S.X.	Please select
0.02	4e+0	32	Zea mays	Zm.8735.1.A1_at	CO520202	hypothetical protein LOC100272543	-	6e-3	At1g08290	zinc finger (C2H2 type) protein (WIP3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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