Gene omics information

Query gene ID PtpAffx.53470.1.S1_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.6791.1PtpAffx.53470.1.S1_atBU879364hypothetical protein-6e-56At1g12050fumarylacetoacetase, putativeS.X.H.G.
0.4673.7PtpAffx.201300.1.S1_s_atpmrna2582hypothetical protein-1e-34At3g13224RNA recognition motif (RRM)-containing proteinS.X.H.G.
0.4673.7PtpAffx.149265.1.S1_s_atCV131132hypothetical protein-3e-54At2g14260PIPS.X.H.G.
0.4673.7PtpAffx.218468.1.S1_atpmrna34094hypothetical protein-0At3g25800PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)S.X.H.G.
0.4067.0PtpAffx.85760.1.S1_s_atCX181147hypothetical protein-6e-6At3g25800PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)S.X.H.G.
0.3357.5PtpAffx.26440.3.S1_a_atCV237961hypothetical protein-1e-24At3g53500zinc knuckle (CCHC-type) family proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
3.092.9GSM328277Populus x canescens root control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplar
3.092.9GSM244441Mixed infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.992.5GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.892.1GSM244436Mmd infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.691.3GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplar
2.691.3GSM244438Mmd infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.590.9GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplar
2.490.4GSM244430non infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.490.4GSM328534Populus x canescens root control_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplar
2.490.4GSM244434Mlp infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.241e-119430Ptp.1556.1.A1_atCV283141hypothetical protein-8e-15At1g12050fumarylacetoacetase, putativeC.G.S.X.
0.023e+034PtpAffx.83486.1.S1_atCK095228--6e-53At3g25660glutamyl-tRNA(Gln) amidotransferase, putativeC.G.S.X.
0.013e+034PtpAffx.3985.1.S1_atCV264450hypothetical protein-5e-26At2g33120SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1)C.G.S.X.
0.013e+034PtpAffx.215066.1.S1_atpmrna29026hypothetical protein-4e-98At3g21060transducin family protein / WD-40 repeat family proteinC.G.S.X.
0.023e+034PtpAffx.212650.1.S1_atpmrna24754hypothetical protein-2e-2At5g60880unknown proteinC.G.S.X.
0.023e+034PtpAffx.204802.1.S1_atpmrna9464hypothetical protein-5e+0At4g29658PRA1.C (PRENYLATED RAB ACCEPTOR 1.C)C.G.S.X.
0.013e+034PtpAffx.203253.1.S1_atpmrna6438hypothetical protein-2e-1At5g26070hydroxyproline-rich glycoprotein family proteinC.G.S.X.
0.013e+034PtpAffx.201152.1.S1_atpmrna2263hypothetical protein-3e-83At3g21060transducin family protein / WD-40 repeat family proteinC.G.S.X.
0.023e+034PtpAffx.154852.1.S1_atCK100515hypothetical protein-1e-7At4g00050UNE10 (unfertilized embryo sac 10)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.416e-56218Arabidopsis thalianaAt1g12050837757fumarylacetoacetase, putativeF:fumarylacetoacetase activity, catalytic activity;P:aromatic amino acid family metabolic process, metabolic process;C:cellular_component unknown;BOMFAP---C.G.S.X.
0.037e-136Glycine maxGmaAffx.42255.1.S1_atBQ612697--3e+0At2g04925-C.G.S.X.
0.032e-859Hordeum vulgareContig5601_atContig5601--6e-23At1g12050fumarylacetoacetase, putativeC.G.S.X.
0.161e-1895Oryza sativaOs02g0196800AK070521.1-Fumarylacetoacetase (Fragment)1e-18At1g12050fumarylacetoacetase, putativeC.G.S.X.
0.132e-1067Triticum aestivumTa.29359.1.A1_s_atBQ162252--4e-11At1g12050fumarylacetoacetase, putativeC.G.S.X.
0.332e-44178Vitis vinifera1615391_atCF568848--1e-15At1g12050fumarylacetoacetase, putativeC.G.S.X.
0.146e-1167Zea maysZm.8341.1.A1_atAY108192.1hypothetical protein LOC100192910-2e-20At1g12050fumarylacetoacetase, putativeC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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