CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.5315.1.A1_s_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 94.9 PtpAffx.5315.1.A1_s_at CV236250 hypothetical protein - 1e-90 At4g09800 RPS18C (S18 RIBOSOMAL PROTEIN) S.X. H.G.
0.77 94.9 PtpAffx.14802.1.A1_s_at CV250490 hypothetical protein - 5e-62 At2g39390 60S ribosomal protein L35 (RPL35B) S.X. H.G.
0.60 86.0 Ptp.5633.1.S1_x_at CV280439 - - 9e-37 At4g34670 40S ribosomal protein S3A (RPS3aB) S.X. H.G.
0.53 80.5 Ptp.5633.1.S1_at CV280439 hypothetical protein - 9e-37 At4g34670 40S ribosomal protein S3A (RPS3aB) S.X. H.G.
0.50 78.6 PtpAffx.11485.3.A1_x_at CV235651 hypothetical protein - 9e-23 At2g40590 40S ribosomal protein S26 (RPS26B) S.X. H.G.
0.16 26.9 PtpAffx.18640.1.A1_s_at CV239752 hypothetical protein - 3e-45 At5g18380 40S ribosomal protein S16 (RPS16C) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.5 96.1 GSM327406 Populus balsamifera_1006_young_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.4 94.0 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM362884 Clone1979_LPI2_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.7 91.8 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6 91.3 GSM372090 Clone3200_LPI2_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3 89.8 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.2 89.3 GSM327358 Populus balsamifera_20071015_Seedling_continuous_light_6d_2 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM327281 Populus balsamifera_20071015_Seedling_continuous_light_6d_1 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.88 0 1346 PtpAffx.5315.1.A1_at CV236250 hypothetical protein - 1e-90 At4g09800 RPS18C (S18 RIBOSOMAL PROTEIN) C.G. S.X.
0.71 0 801 Ptp.2101.1.S1_at CK320889 hypothetical protein - 2e-95 At4g09800 RPS18C (S18 RIBOSOMAL PROTEIN) C.G. S.X.
0.71 0 801 Ptp.2101.1.S1_x_at CK320889 hypothetical protein - 2e-95 At4g09800 RPS18C (S18 RIBOSOMAL PROTEIN) C.G. S.X.
0.47 2e-84 313 PtpAffx.24704.1.S1_at CN550005 hypothetical protein - 2e-98 At4g09800 RPS18C (S18 RIBOSOMAL PROTEIN) C.G. S.X.
0.63 5e-60 232 PtpAffx.5315.2.A1_at CX174259 hypothetical protein - 4e-16 At1g22780 PFL (POINTED FIRST LEAVES) C.G. S.X.
0.34 2e-28 127 PtpAffx.201780.1.S1_at pmrna3550 hypothetical protein - 6e-26 At1g22780 PFL (POINTED FIRST LEAVES) C.G. S.X.
0.12 2e-4 48 Ptp.3301.1.S1_at DN485494 - - 2e-3 At4g09800 RPS18C (S18 RIBOSOMAL PROTEIN) C.G. S.X.
0.10 2e-3 44 PtpAffx.201781.1.S1_at pmrna3551 hypothetical protein - 1e-13 At4g09800 RPS18C (S18 RIBOSOMAL PROTEIN) C.G. S.X.
0.03 4e-2 40 PtpAffx.99162.1.S1_at CV279989 hypothetical protein - 1e+0 At2g17870 cold-shock DNA-binding family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.57 1e-90 333 Arabidopsis thaliana At4g09800 826569 RPS18C (S18 RIBOSOMAL PROTEIN) encodes a ribosomal protein S18C, a constituent of the small subunit of the ribosomal complex - - - C.G. S.X.
0.30 3e-21 103 Glycine max Gma.4208.2.S1_at CD401340 - - 2e-34 At1g22780 PFL (POINTED FIRST LEAVES) C.G. S.X.
0.44 9e-44 176 Hordeum vulgare Contig1342_at Contig1342 - - 8e-21 At1g22780 PFL (POINTED FIRST LEAVES) C.G. S.X.
0.44 2e-60 234 Oryza sativa Os07g0173700 BM418791 - 40S ribosomal protein S18 4e-41 At1g34030 40S ribosomal protein S18 (RPS18B) C.G. S.X.
0.34 2e-31 137 Triticum aestivum Ta.2896.1.S1_x_at CK163384 - - 3e-24 At1g22780 PFL (POINTED FIRST LEAVES) C.G. S.X.
0.49 6e-124 442 Vitis vinifera 1618190_at CF211959 hypothetical protein LOC100254589 - 4e-72 At1g22780 PFL (POINTED FIRST LEAVES) C.G. S.X.
0.43 2e-47 188 Zea mays Zm.7097.2.A1_a_at CF019338 hypothetical protein LOC100273341 /// 40S ribosomal protein S18 - 2e-27 At1g22780 PFL (POINTED FIRST LEAVES) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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