Gene omics information

Query gene ID	PtpAffx.52722.1.A1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	97.0	PtpAffx.52722.1.A1_at	CV268968	hypothetical protein	-	9e-50	At2g01110	APG2 (ALBINO AND PALE GREEN 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	Ptp.2307.1.S1_at	CV270997	hypothetical protein	-	2e-16	At3g06330	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.88369.1.A1_at	CV269685	hypothetical protein	-	2e-1	At3g09860	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.53	80.5	PtpAffx.121105.1.A1_at	CV254110	-	-	2e+0	At1g02740	chromatin binding	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	Ptp.3804.1.S1_at	CV261647	hypothetical protein	-	4e-61	At5g47840	AMK2 (Adenosine monophosphate kinase)	S.X.	H.G.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.4206.1.S1_at	CV236414	hypothetical protein	-	1e+1	At5g28850	calcium-binding EF hand family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.0	95.3	GSM372045	Clone1979_LPI5_N+_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.8	94.9	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.7	94.7	GSM372043	Clone1979_LPI5_N-_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.5	94.3	GSM372100	Clone3200_LPI5_N+_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.3	93.7	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.3	93.7	GSM372099	Clone3200_LPI5_N+_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.9	92.5	GSM327358	Populus balsamifera_20071015_Seedling_continuous_light_6d_2	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.8	92.1	GSM372044	Clone1979_LPI5_N+_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5	90.9	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	3e-1	38	PtpAffx.202107.1.S1_at	pmrna4210	hypothetical protein	-	2e-129	At2g44900	armadillo/beta-catenin repeat family protein / F-box family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e-1	38	Ptp.896.1.A1_at	CK090143	hypothetical protein	-	7e-2	At2g44900	armadillo/beta-catenin repeat family protein / F-box family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e+0	36	PtpAffx.50045.1.A1_at	CV226061	hypothetical protein	-	5e-16	At1g03457	RNA-binding protein, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.48184.1.S1_at	BI127075	-	-	8e+0	At5g06250	transcription factor	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e+0	36	PtpAffx.34705.1.S1_s_at	CK091571	hypothetical protein	-	3e-1	At1g65280	heat shock protein binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.2792.1.S1_at	CN524220	ATP/ADP transporter	-	2e-24	At1g15500	ATNTT2	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.221295.1.S1_at	pmrna38078	hypothetical protein	-	1e-1	At1g65280	heat shock protein binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.211785.1.S1_at	pmrna23118	hypothetical protein	-	6e-63	At4g03110	RNA-binding protein, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e+0	36	PtpAffx.19965.3.A1_at	CV269575	-	-	2e-5	At5g57770	-	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.34	9e-50	198	Arabidopsis thaliana	At2g01110	814640	APG2 (ALBINO AND PALE GREEN 2)	mutant is Albino and pale green; Chloroplast Protein Translocation (tatC). Core subunit of the chloroplast Tat translocase. Integral chloroplast thylakoid membrane protein.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.41	2e-113	410	Glycine max	Gma.5061.1.S1_at	BQ298578	-	-	4e-51	At2g01110	APG2 (ALBINO AND PALE GREEN 2)	C.G.	S.X.	Please select
0.16	1e-10	67	Hordeum vulgare	Contig10080_at	Contig10080	-	-	8e-10	At2g01110	APG2 (ALBINO AND PALE GREEN 2)	C.G.	S.X.	Please select
0.20	5e-22	107	Oryza sativa	Os01g0501700	AB050885.1	-	OsTATC protein	1e-21	At2g01110	APG2 (ALBINO AND PALE GREEN 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.16	1e-14	81	Triticum aestivum	Ta.12041.2.A1_at	CD862753	-	-	7e-15	At2g01110	APG2 (ALBINO AND PALE GREEN 2)	C.G.	S.X.	Please select
0.28	2e-57	222	Vitis vinifera	1617213_at	CF415076	hypothetical protein LOC100259443	-	2e-39	At2g01110	APG2 (ALBINO AND PALE GREEN 2)	C.G.	S.X.	Please select
0.25	4e-19	95	Zea mays	Zm.8565.1.S1_at	CO528893	hypothetical protein LOC100279882	-	8e-7	At2g01110	APG2 (ALBINO AND PALE GREEN 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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