Gene omics information

Query gene ID	PtpAffx.52716.1.A1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	91.1	PtpAffx.52716.1.A1_s_at	CK096645	hypothetical protein	-	6e-28	At5g17380	pyruvate decarboxylase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.63	88.1	PtpAffx.42410.1.S1_s_at	BP922740	hypothetical protein	-	1e-20	At1g64140	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.61	87.0	PtpAffx.42410.1.S1_at	BP922740	hypothetical protein	-	1e-20	At1g64140	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.46	73.7	PtpAffx.131455.1.S1_s_at	CK102810	hypothetical protein	-	7e-39	At4g02570	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.38	63.7	Ptp.5819.1.S1_at	CK114175	hypothetical protein	-	3e-18	At5g59420	ORP3C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3C)	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.116322.1.S1_at	CK106873	histone acetyltransferase /// histone acetyltransferase	-	1e-34	At1g79000	HAC1 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.4	95.9	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.1	95.5	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.0	95.3	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.9	95.1	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.6	94.5	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.4	94.0	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.4	94.0	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.0	92.9	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1645	PtpAffx.52716.1.A1_at	CK096645	hypothetical protein	-	6e-28	At5g17380	pyruvate decarboxylase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.48	0	1344	PtpAffx.203945.1.S1_at	pmrna7783	hypothetical protein	-	7e-45	At5g17380	pyruvate decarboxylase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.44	0	829	PtpAffx.52716.2.A1_s_at	CV260868	hypothetical protein	-	2e-40	At5g17380	pyruvate decarboxylase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	6e-1	36	PtpAffx.96516.1.S1_at	CK088002	-	-	1e+0	At3g17460	PHD finger family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	6e-1	36	PtpAffx.96516.1.S1_s_at	CK088002	hypothetical protein	-	1e+0	At3g17460	PHD finger family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	6e-1	36	PtpAffx.225459.1.S1_x_at	pmrna44819	hypothetical protein	-	2e-14	At5g45160	root hair defective 3 GTP-binding (RHD3) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	6e-1	36	PtpAffx.225437.1.S1_at	pmrna44786	hypothetical protein	-	2e-14	At5g45160	root hair defective 3 GTP-binding (RHD3) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	6e-1	36	PtpAffx.225460.1.S1_at	pmrna44820	-	-	2e-14	At5g45160	root hair defective 3 GTP-binding (RHD3) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	6e-1	36	PtpAffx.225459.1.S1_at	pmrna44819	hypothetical protein	-	2e-14	At5g45160	root hair defective 3 GTP-binding (RHD3) family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.17	6e-28	125	Arabidopsis thaliana	At5g17380	831604	pyruvate decarboxylase family protein	F:pyruvate decarboxylase activity, magnesium ion binding, thiamin pyrophosphate binding, transferase activity, catalytic activity;P:unknown;C:cellular_component unknown;OBFPAMV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.38	9e-28	125	Glycine max	Gma.10627.1.S1_at	BU548590	-	-	4e-12	At5g17380	pyruvate decarboxylase family protein	C.G.	S.X.	Please select
0.02	3e+0	32	Hordeum vulgare	HVSMEf0013A01r2_at	HVSMEf0013A01r2	-	-	3e+0	At2g05260	lipase class 3 family protein	C.G.	S.X.	Please select
0.07	4e-15	83	Oryza sativa	Os01g0505400	AK065111.1	-	Pyruvate decarboxylase family protein	2e-10	At5g17380	pyruvate decarboxylase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.08	3e-2	40	Triticum aestivum	Ta.4301.2.S1_at	BJ238530	-	-	2e+0	At3g48800	sterile alpha motif (SAM) domain-containing protein	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1616769_at	AY427200.1	-	-	2e+0	At2g47880	glutaredoxin family protein	C.G.	S.X.	Please select
0.19	4e-15	81	Zea mays	Zm.17533.2.A1_at	CK347975	hypothetical protein LOC100191888	-	6e-5	At5g17380	pyruvate decarboxylase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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