Gene omics information

Query gene ID	PtpAffx.5224.2.A1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.87	97.5	PtpAffx.5224.2.A1_at	CV258799	hypothetical protein	-	1e-10	At2g25000	WRKY60	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.24512.1.S1_at	CV254685	hypothetical protein	-	7e-41	At4g14950	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.221204.1.S1_at	pmrna37911	hypothetical protein	-	4e-4	At4g37280	MRG family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.205138.1.S1_at	pmrna10172	hypothetical protein	-	6e-5	At5g39490	F-box family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.30	52.0	PtpAffx.85164.1.S1_at	CV264750	hypothetical protein	-	1e-2	At1g22140	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.206697.1.S1_at	pmrna13288	hypothetical protein	-	4e-10	At3g20430	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.3207.5.S1_at	DN490131	-	-	6e-3	At1g29810	dehydratase family	S.X.	H.G.	Please selecteFP Browser (expression)
0.28	50.5	PtpAffx.203886.1.S1_at	pmrna7674	hypothetical protein	-	3e-5	At1g28250	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.12425.1.S1_at	CV228084	hypothetical protein	-	7e-34	At2g46580	pyridoxine 5'-phosphate oxidase-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.211910.1.S1_x_at	pmrna23393	hypothetical protein	-	4e-40	At2g04880	ZAP1 (ZINC-DEPENDENT ACTIVATOR PROTEIN-1)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.4	98.6	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
6.0	97.5	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
5.1	96.8	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.5	96.1	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.4	95.9	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.1	95.5	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.1	95.5	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.1	95.5	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.0	92.9	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.55	0	710	Ptp.2164.1.S1_s_at	CV242458	hypothetical protein	-	5e-17	At2g25000	WRKY60	C.G.	S.X.	Please selecteFP Browser (expression)
0.43	2e-90	333	PtpAffx.5224.1.A1_at	CV276226	hypothetical protein	-	3e-6	At4g31800	WRKY18	C.G.	S.X.	Please selecteFP Browser (expression)
0.13	3e-27	123	PtpAffx.10586.1.S1_at	BP930543	hypothetical protein	-	1e-26	At1g80840	WRKY40	C.G.	S.X.	Please selecteFP Browser (expression)
0.11	2e-25	117	PtpAffx.10586.2.S1_at	CV239110	hypothetical protein	-	3e-28	At1g80840	WRKY40	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	9e-9	61	PtpAffx.214237.1.S1_at	pmrna27700	hypothetical protein	-	3e-8	At2g25000	WRKY60	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	3e-2	40	PtpAffx.211910.1.S1_x_at	pmrna23393	hypothetical protein	-	4e-40	At2g04880	ZAP1 (ZINC-DEPENDENT ACTIVATOR PROTEIN-1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	3e-2	40	PtpAffx.211910.1.S1_at	pmrna23393	hypothetical protein	-	4e-40	At2g04880	ZAP1 (ZINC-DEPENDENT ACTIVATOR PROTEIN-1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e-1	38	PtpAffx.215735.1.S1_at	pmrna30097	hypothetical protein	-	5e-24	At1g18860	WRKY61	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e-1	36	PtpAffx.65912.1.S1_at	CV258480	-	-	2e-16	At2g24570	WRKY17	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	1e-10	67	Arabidopsis thaliana	At2g25000	817039	WRKY60	Pathogen-induced transcription factor. Forms protein complexes with itself and with WRKY40. Coexpression with WRKY18 or WRKY40 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.21	4e-26	119	Glycine max	Gma.10818.2.S1_at	AW568786	WRKY78	-	8e-23	At1g80840	WRKY40	C.G.	S.X.	Please select
0.03	7e-1	34	Hordeum vulgare	rbags16n19_s_at	rbags16n19	-	-	5e-1	At1g49590	formin-binding protein-related	C.G.	S.X.	Please select
0.02	5e-2	40	Oryza sativa	Os.12032.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	1e-1	38	Triticum aestivum	TaAffx.78545.2.S1_s_at	CA627335	WRKY39 transcription factor	-	4e-3	At4g33780	-	C.G.	S.X.	Please select
0.19	2e-21	101	Vitis vinifera	1614806_s_at	CB343751	hypothetical protein LOC100264507	-	2e-4	At2g25000	WRKY60	C.G.	S.X.	Please select
0.03	6e-1	34	Zea mays	Zm.9808.1.A1_at	CF628817	hypothetical protein LOC100194097	-	7e+0	At4g20990	ACA4 (ALPHA CARBONIC ANHYDRASE 4)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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