Gene omics information

Query gene ID PtpAffx.52208.2.A1_a_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.6791.1PtpAffx.52208.2.A1_a_atCV272283hypothetical protein-1e-3At1g72550tRNA synthetase beta subunit family proteinS.X.H.G.
0.4067.0PtpAffx.81968.1.A1_atCV266089hypothetical protein-9e-11At1g11520pliceosome associated protein-relatedS.X.H.G.
0.3661.6PtpAffx.142827.1.S1_a_atCV276199hypothetical protein-2e-50At4g31860protein phosphatase 2C, putative / PP2C, putativeS.X.H.G.
0.3661.6PtpAffx.8698.1.A1_atCV268649--5e-1At2g35950EDA12 (embryo sac development arrest 12)S.X.H.G.
0.3357.5PtpAffx.3772.1.A1_atBP934755hypothetical protein-6e+0At3g15150zinc ion bindingS.X.H.G.
0.2950.5Ptp.5801.1.S1_atCV246839hypothetical protein-2e-16At1g24440protein binding / zinc ion bindingS.X.H.G.
0.2645.2PtpAffx.1634.3.A1_atBP933609hypothetical protein-3e-1At3g26680SNM1 (SENSITIVE TO NITROGEN MUSTARD 1)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
9.098.7GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
8.298.5GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.395.8GSM244433Mlp infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.195.5GSM244441Mixed infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.794.7GSM244436Mmd infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.594.3GSM244439Mixed infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.494.0GSM244431non infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.393.7GSM244438Mmd infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.293.5GSM244434Mlp infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.293.5GSM244440Mixed infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.435e-115414PtpAffx.52208.1.A1_atCV276617hypothetical protein-5e-7At1g72550tRNA synthetase beta subunit family proteinC.G.S.X.
0.211e-35151PtpAffx.52208.4.A1_atCK094315--7e-1At5g22320leucine-rich repeat family proteinC.G.S.X.
0.021e-138Ptp.2832.1.A1_atCV282878hypothetical protein-4e-1At1g65000unknown proteinC.G.S.X.
0.035e-136PtpAffx.86646.1.S1_atBU891442--2e+0At5g51210OLEO3 (OLEOSIN3)C.G.S.X.
0.025e-136PtpAffx.25202.1.A1_atCV229061hypothetical protein-8e-43At5g47640NF-YB2 (NUCLEAR FACTOR Y, SUBUNIT B2)C.G.S.X.
0.025e-136Ptp.2022.1.S1_s_atCV258781hypothetical protein-9e-6At5g14240-C.G.S.X.
0.042e+034PtpAffx.9895.1.A1_atDN491003hypothetical protein-1e+1At5g35510unknown proteinC.G.S.X.
0.032e+034PtpAffx.76403.1.A1_atCV232143hypothetical protein-3e+0At4g19035LCR7 (Low-molecular-weight cysteine-rich 7)C.G.S.X.
0.032e+034PtpAffx.59515.1.S1_s_atBU895418hypothetical protein-2e-2At5g61470zinc finger (C2H2 type) family proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.081e-344Arabidopsis thalianaAt1g72550843587tRNA synthetase beta subunit family proteinF:phenylalanine-tRNA ligase activity, RNA binding, magnesium ion binding, nucleotide binding, ATP binding;P:phenylalanyl-tRNA aminoacylation, translation;C:phenylalanine-tRNA ligase complex, cytoplasm;BOMAFP---C.G.S.X.
0.142e-1273Glycine maxGma.2819.1.S1_atBE821662--5e-33At1g72550tRNA synthetase beta subunit family proteinC.G.S.X.
0.021e+130Hordeum vulgareContig20292_atContig20292--3e-4At3g58120BZIP61C.G.S.X.
0.033e+034Oryza sativaOsAffx.26436.1.S1_at---0C.G.S.X.
0.031e+034Triticum aestivumTaAffx.52267.1.S1_atCA710256--3e+0At5g41640unknown proteinC.G.S.X.
0.308e-1889Vitis vinifera1620105_atCB007928--2e-6At1g72550tRNA synthetase beta subunit family proteinC.G.S.X.
0.039e+030Zea maysZmAffx.485.1.S1_atAI691349--8e-1Atmg00140-C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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