Gene omics information

Query gene ID	PtpAffx.52208.2.A1_a_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	91.1	PtpAffx.52208.2.A1_a_at	CV272283	hypothetical protein	-	1e-3	At1g72550	tRNA synthetase beta subunit family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.81968.1.A1_at	CV266089	hypothetical protein	-	9e-11	At1g11520	pliceosome associated protein-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.142827.1.S1_a_at	CV276199	hypothetical protein	-	2e-50	At4g31860	protein phosphatase 2C, putative / PP2C, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.8698.1.A1_at	CV268649	-	-	5e-1	At2g35950	EDA12 (embryo sac development arrest 12)	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.3772.1.A1_at	BP934755	hypothetical protein	-	6e+0	At3g15150	zinc ion binding	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	Ptp.5801.1.S1_at	CV246839	hypothetical protein	-	2e-16	At1g24440	protein binding / zinc ion binding	S.X.	H.G.	Please selecteFP Browser (expression)
0.26	45.2	PtpAffx.1634.3.A1_at	BP933609	hypothetical protein	-	3e-1	At3g26680	SNM1 (SENSITIVE TO NITROGEN MUSTARD 1)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.0	98.7	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
8.2	98.5	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.3	95.8	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.1	95.5	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.7	94.7	GSM244436	Mmd infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.5	94.3	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.4	94.0	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.3	93.7	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.2	93.5	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.2	93.5	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.43	5e-115	414	PtpAffx.52208.1.A1_at	CV276617	hypothetical protein	-	5e-7	At1g72550	tRNA synthetase beta subunit family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.21	1e-35	151	PtpAffx.52208.4.A1_at	CK094315	-	-	7e-1	At5g22320	leucine-rich repeat family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e-1	38	Ptp.2832.1.A1_at	CV282878	hypothetical protein	-	4e-1	At1g65000	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	5e-1	36	PtpAffx.86646.1.S1_at	BU891442	-	-	2e+0	At5g51210	OLEO3 (OLEOSIN3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e-1	36	PtpAffx.25202.1.A1_at	CV229061	hypothetical protein	-	8e-43	At5g47640	NF-YB2 (NUCLEAR FACTOR Y, SUBUNIT B2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e-1	36	Ptp.2022.1.S1_s_at	CV258781	hypothetical protein	-	9e-6	At5g14240	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	2e+0	34	PtpAffx.9895.1.A1_at	DN491003	hypothetical protein	-	1e+1	At5g35510	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e+0	34	PtpAffx.76403.1.A1_at	CV232143	hypothetical protein	-	3e+0	At4g19035	LCR7 (Low-molecular-weight cysteine-rich 7)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e+0	34	PtpAffx.59515.1.S1_s_at	BU895418	hypothetical protein	-	2e-2	At5g61470	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	1e-3	44	Arabidopsis thaliana	At1g72550	843587	tRNA synthetase beta subunit family protein	F:phenylalanine-tRNA ligase activity, RNA binding, magnesium ion binding, nucleotide binding, ATP binding;P:phenylalanyl-tRNA aminoacylation, translation;C:phenylalanine-tRNA ligase complex, cytoplasm;BOMAFP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.14	2e-12	73	Glycine max	Gma.2819.1.S1_at	BE821662	-	-	5e-33	At1g72550	tRNA synthetase beta subunit family protein	C.G.	S.X.	Please select
0.02	1e+1	30	Hordeum vulgare	Contig20292_at	Contig20292	-	-	3e-4	At3g58120	BZIP61	C.G.	S.X.	Please select
0.03	3e+0	34	Oryza sativa	OsAffx.26436.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e+0	34	Triticum aestivum	TaAffx.52267.1.S1_at	CA710256	-	-	3e+0	At5g41640	unknown protein	C.G.	S.X.	Please select
0.30	8e-18	89	Vitis vinifera	1620105_at	CB007928	-	-	2e-6	At1g72550	tRNA synthetase beta subunit family protein	C.G.	S.X.	Please select
0.03	9e+0	30	Zea mays	ZmAffx.485.1.S1_at	AI691349	-	-	8e-1	Atmg00140	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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